View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19442_low_16 (Length: 220)
Name: NF19442_low_16
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19442_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 26854625 - 26854773
Alignment:
| Q |
66 |
attatgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaaccataataagtg |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26854625 |
attatgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaaccataataagtg |
26854724 |
T |
|
| Q |
166 |
gaacaaaaatccctaaaatcattgtcgttgttttccatctagtgtaaac |
214 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26854725 |
gaacaaaaatccgtaaaatcattgtcattgttttccatctagtgtaaac |
26854773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 9962668 - 9962762
Alignment:
| Q |
66 |
attatgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaaccataat |
160 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
9962668 |
attatgttcaacattctcagtagatttaccttgactaccaacaatcaccggataggttttatcatcattcaaatccacatccgtagaaccgtaat |
9962762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 15845456 - 15845594
Alignment:
| Q |
70 |
tgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaac------cataataag |
163 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||| ||||| ||||| || ||| |||||| |||||||||||||| |||| | || |
|
|
| T |
15845456 |
tgttcaacattctcaatagatttaccttgactcccgacaatcatcggagaggtt---tcgtcactcaaatccacatccgtagaaccgtaatcatattcag |
15845552 |
T |
|
| Q |
164 |
tggaacaaaaatccctaaaatcattgtcgttgttttccatct |
205 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
15845553 |
gtgaaccaaaatccgtaaaatcattgttgttgttttccatct |
15845594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 15854666 - 15854804
Alignment:
| Q |
70 |
tgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaac------cataataag |
163 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||| ||||| ||||| || ||| |||||| |||||||||||||| |||| | || |
|
|
| T |
15854666 |
tgttcaacattctcaatagatttaccttgactcccgacaatcatcggagaggtt---tcgtcactcaaatccacatccgtagaaccgtaatcatattcag |
15854762 |
T |
|
| Q |
164 |
tggaacaaaaatccctaaaatcattgtcgttgttttccatct |
205 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
15854763 |
gtgaaccaaaatccgtaaaatcattgttgttgttttccatct |
15854804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University