View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19442_low_4 (Length: 402)
Name: NF19442_low_4
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19442_low_4 |
 | |
|
| [»] scaffold0667 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 29443321 - 29443688
Alignment:
| Q |
20 |
tggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443321 |
tggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttt |
29443420 |
T |
|
| Q |
120 |
tactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443421 |
tactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgag |
29443520 |
T |
|
| Q |
220 |
aagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443521 |
aagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaac |
29443620 |
T |
|
| Q |
320 |
cttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443621 |
cttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttt |
29443688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 29423407 - 29423051
Alignment:
| Q |
20 |
tggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttt |
119 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29423407 |
tggaagggtgcctttgtatgactgtgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaactttt |
29423308 |
T |
|
| Q |
120 |
tactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgag |
219 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
29423307 |
tactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaggtatggttctgttgcaagtagatcctgag |
29423208 |
T |
|
| Q |
220 |
aagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| | ||||| ||||| ||||||||||||||||||||| || |
|
|
| T |
29423207 |
aagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatcac |
29423108 |
T |
|
| Q |
320 |
cttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgatta |
376 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29423107 |
cttccttccctaggaaggagaatcgcacaagcaagagaaggtacttcttattgatta |
29423051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 29453302 - 29453672
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29453302 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtgaactt |
29453401 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtg |
217 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||| | ||||| || ||||| ||||||||||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
29453402 |
tttactttggcggaatcatgtttcattttacctttgaaaactttgtggcctttagcttattcgagcgatggaagtatggttctgttggaagtagattgtg |
29453501 |
T |
|
| Q |
218 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||| || || |||||||||||||||||||| | |
|
|
| T |
29453502 |
agaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgcc |
29453601 |
T |
|
| Q |
318 |
accttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagtttttg |
388 |
Q |
| |
|
|||||| ||||||||||| |||||| | ||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
29453602 |
accttccttccccaggaaagagaattatacaagcaagagaaggtactccttatttattatctgagtttttg |
29453672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 29467778 - 29468147
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
29467778 |
tttgggagggtgtctttagttgattgtgaattatcaaactagtaaaattgatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaactt |
29467877 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtg |
217 |
Q |
| |
|
|||||||||| | ||||||||||| ||||| ||| | |||||||| ||||||||||||||||||| |||||||||||||||| ||||||| | || |
|
|
| T |
29467878 |
tttactttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgagcgatggaagtatggttctgtttgaagtagaccatg |
29467977 |
T |
|
| Q |
218 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtaca |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| || || | || || |||||||||||||||||||||| |
|
|
| T |
29467978 |
agaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatgaagctatgatttgtgttggaagtcttgtacc |
29468077 |
T |
|
| Q |
318 |
accttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttt |
387 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29468078 |
accttccttccctaggaacgagaatcgcacaagcaagagaaggtacttcttattgattgtctgagttttt |
29468147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 34)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 28 - 329
Target Start/End: Original strand, 9284198 - 9284499
Alignment:
| Q |
28 |
tgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||| |
|
|
| T |
9284198 |
tgtcttagtatgattgtgaattatcaaactactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaaatttttactttgg |
9284297 |
T |
|
| Q |
128 |
ctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgtt |
227 |
Q |
| |
|
| |||| | |||| ||||| ||||| | |||||||| |||||||||||| || ||| | |||| |||||| || || ||||| || |||||||| | |
|
|
| T |
9284298 |
ttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctagtgatggtagtaaggttctattagaaatagattgtaagaagctggt |
9284397 |
T |
|
| Q |
228 |
ttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaaccttctttc |
327 |
Q |
| |
|
|||||||||| | |||||||| |||| |||||||||||||||||||| ||||| | || || |||||||||| ||||||||| | |||||| ||| |
|
|
| T |
9284398 |
ttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttgtgccaccttccttc |
9284497 |
T |
|
| Q |
328 |
cc |
329 |
Q |
| |
|
|| |
|
|
| T |
9284498 |
cc |
9284499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 10353247 - 10352949
Alignment:
| Q |
24 |
agggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttact |
123 |
Q |
| |
|
|||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
10353247 |
agggtgtctttgtatgattgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaactttttact |
10353148 |
T |
|
| Q |
124 |
ttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagc |
223 |
Q |
| |
|
||| | |||| | |||| |||||||||| | |||||||| |||||||||||||||| ||||||| | |||| ||||| |||||| |||||| | |
|
|
| T |
10353147 |
gtggttaaatcttctttcgatttacctttgcaatctttgaggcttttaggttattcgagtgatagaaaaaaggttttgttgagggtagatgttgagaatc |
10353048 |
T |
|
| Q |
224 |
tgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaacctt |
322 |
Q |
| |
|
| |||||||||||| | ||||| || |||||||||||| ||| ||||| || ||||| | | || |||||||||||||||||||||| ||||| |
|
|
| T |
10353047 |
tattttggtatgatttggagagtaaacaagttagttatgttcaagaaattcttaatttggatgacactatgatttgtgttggaagtcttgtaccacctt |
10352949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 9328743 - 9328485
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| |||||||||||| |||| | |||||||| ||||| | ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |
|
|
| T |
9328743 |
tttgggagggtgtctttgcatgactttgaattatgaaactactgaaattgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaactt |
9328644 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtg |
217 |
Q |
| |
|
|||||| ||| | ||||||||||| ||||||||||| | |||||||| ||||||||||| ||| ||| ||| | |||| ||||| || ||| || |
|
|
| T |
9328643 |
tttactatggttaaatcgtgtttccatttacctttgaaatctttgaggcctttaggttatttgagtgatggaaaaaaggttttgttgagggtggattttg |
9328544 |
T |
|
| Q |
218 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct |
276 |
Q |
| |
|
|||||||||||| ||||||| | | ||||| | |||||||||||||||||||||||| |
|
|
| T |
9328543 |
agaagctgtttttgtatgattttaggagtgcacaagttagttatgttgaaggaattcct |
9328485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 65 - 276
Target Start/End: Complemental strand, 9321079 - 9320868
Alignment:
| Q |
65 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgag |
164 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||| | ||||||||| | ||||||||||| | ||||||| |
|
|
| T |
9321079 |
ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgag |
9320980 |
T |
|
| Q |
165 |
gattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgtt |
264 |
Q |
| |
|
| ||||||||||||||| ||| ||| | |||| ||||| |||||| |||||||||||||||||||||| | ||||||| | |||||||||||| |
|
|
| T |
9320979 |
gcctttaggttattcgagtgatggaaaaaaggttttgttgagggtagatgctgagaagctgttttggtatgatttgaagagtgcacaagttagttatgtt |
9320880 |
T |
|
| Q |
265 |
gaaggaattcct |
276 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9320879 |
gaaggaattcct |
9320868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 69 - 323
Target Start/End: Original strand, 12018937 - 12019191
Alignment:
| Q |
69 |
tgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggatt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| ||| |||||| | |
|
|
| T |
12018937 |
tgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagccct |
12019036 |
T |
|
| Q |
169 |
ttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaag |
268 |
Q |
| |
|
|||||||||||||| ||| ||| | |||| ||||| | ||| ||| | | | |||| ||||||||||| | |||||| | |||||||||||||||| |
|
|
| T |
12019037 |
ttaggttattcgagtgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagttagttatgttgaag |
12019136 |
T |
|
| Q |
269 |
gaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaaccttc |
323 |
Q |
| |
|
||||||||| | ||| | ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
12019137 |
gaattcctaatttcgatgaagccatgatttgtgttggaagtcttgtaccaccttc |
12019191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 12012543 - 12012858
Alignment:
| Q |
17 |
atttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaact |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||| ||| |||||||| | |||||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
12012543 |
atttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaact |
12012642 |
T |
|
| Q |
117 |
ttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatgg------ttctgttgcaagta |
210 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||| | |||||| ||| |||||||||| ||| | | |||| || ||||| | ||| |
|
|
| T |
12012643 |
ttttactttggtggaatcgtgtttcgttttacctttgatatttttgagacctttgggttattcgaatgatggtaaaatggttttgtttttgttggaggta |
12012742 |
T |
|
| Q |
211 |
gatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtc |
310 |
Q |
| |
|
||| | |||||||| ||||||||||| | |||||| || ||||||||||||||||||||||||| | ||| | || || |||||||||||||||| |
|
|
| T |
12012743 |
aatcataagaagctggtttggtatgatttgaagagtcaa---gttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtc |
12012839 |
T |
|
| Q |
311 |
ttgtacaaccttctttccc |
329 |
Q |
| |
|
|||||| ||| || ||||| |
|
|
| T |
12012840 |
ttgtaccaccctccttccc |
12012858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 10335988 - 10335704
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |
|
|
| T |
10335988 |
tttgggagggtgtctttgtttgcctgtgaattatcaaactactaaaattgatgtttgggtgatgaaagaatatggctgtagagatagttggtgtaaacat |
10335889 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtg |
217 |
Q |
| |
|
|||||||||| | |||||||||| ||| ||||||| ||||||||||| || ||| |||||| |||||| ||| || | ||| || |
|
|
| T |
10335888 |
tttactttggttaaatcgtgtttagattt------------tttgaggcctttaggttattgtagtgatggaagtaaggttctattggaaatcgattgta |
10335801 |
T |
|
| Q |
218 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgt |
314 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||| | | || |||||||||||||||||||| |
|
|
| T |
10335800 |
agaagttgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtcttgt |
10335704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 9316157 - 9315852
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
9316157 |
tttgggagggtgtctttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatggat------ctagttggtgtaaactt |
9316064 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtg |
217 |
Q |
| |
|
|||||||||| | | || ||||||| |||| |||||| ||||| | |||||||||||| || || |||||| |||||| ||| || ||||| || |
|
|
| T |
9316063 |
tttactttggttaattcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaaggttctattggaaatagattgta |
9315964 |
T |
|
| Q |
218 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtaca |
317 |
Q |
| |
|
||||||||||||||| ||| | | ||||||| |||| |||||||||||||||| ||| ||||| | || || |||||||||| ||||||||||| |
|
|
| T |
9315963 |
agaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttgaaagtcttgtacc |
9315864 |
T |
|
| Q |
318 |
accttctttccc |
329 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
9315863 |
accttccttccc |
9315852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 9364772 - 9364464
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | |||||| ||||||||| | |
|
|
| T |
9364772 |
tttgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattg |
9364673 |
T |
|
| Q |
118 |
tttactttgg-ctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgt |
216 |
Q |
| |
|
|||||||||| || || | |||| | |||||||| | | |||||| ||||||||||||||| ||| ||| | |||| | ||| || |||||||| |
|
|
| T |
9364672 |
tttactttggtgggactcttttttccg-acacctttgaaatcgttgaggcctttaggttattcgagtgatggaaagaaggttttattggaaatagatcgt |
9364574 |
T |
|
| Q |
217 |
gagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtac |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| | |||| ||||||||||| || || | || || ||||||||||| |||||||||| |
|
|
| T |
9364573 |
aagaagctgttttggtacgatctcaagagtgaaaacgttactagtgttccaggaattcctaatatgaatgaagctatgatttgtgttggtagtcttgtac |
9364474 |
T |
|
| Q |
317 |
aaccttcttt |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
9364473 |
caccttcttt |
9364464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 9065591 - 9065777
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| ||||| ||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
9065591 |
tttgggagggtgtctttgtatgattttgaattatgaaactactaatattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactt |
9065690 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
204 |
Q |
| |
|
|||||||||| |||| |||||| || || ||||| ||||| |||| | |||||||||| | ||| |||||| |||||||||| |
|
|
| T |
9065691 |
tttactttggtcaaatcttgtttccattcacatttgacagcttcgaggcctctaggttattccggtgatggaagtaaggttctgttg |
9065777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 11987488 - 11987796
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||| |||| ||| || |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11987488 |
tttgggagggtgtctttgtttgactgtgaatcatcatact---aagattgatatttgggtgatgaaagaatatggatgtagagatagttggtgtaaactt |
11987584 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtg |
217 |
Q |
| |
|
|| || ||| |||||||||||| ||||||||||| | ||||||| ||| ||||||||||| ||| | | | |||| ||||| | | ||| |
|
|
| T |
11987585 |
ttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagccctttgggttattcgagtgatggtaaaaaggttttgttggatcttaatcaca |
11987684 |
T |
|
| Q |
218 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtaca |
317 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| ||||||||||||| |||||||||| | ||| | || || |||||||||||||||||||||| |
|
|
| T |
11987685 |
agaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattcgatgaagctatgatttgtgttggaagtcttgtacc |
11987784 |
T |
|
| Q |
318 |
accttctttccc |
329 |
Q |
| |
|
||| || ||||| |
|
|
| T |
11987785 |
accctccttccc |
11987796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 7115640 - 7115902
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
7115640 |
tttgggagggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctagagacagctggtgtaaactt |
7115739 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttg---agagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatc |
214 |
Q |
| |
|
||||| |||| | | ||||||||| |||| ||||| | | || ||| |||||||||||| || ||| |||| | |||||| ||| || ||||| |
|
|
| T |
7115740 |
tttacattggttaattcgtgtttcgatttatctttgattacatggttcaggcctttaggttattctagtgatggaagcaaggttctattggaaatagatt |
7115839 |
T |
|
| Q |
215 |
gtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta |
277 |
Q |
| |
|
|| ||||||| ||||||||||| | ||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
7115840 |
gtaggaagctggtttggtatgatttgaagagcgaacaagttagttgtgttgaaggaattccta |
7115902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 12006115 - 12006427
Alignment:
| Q |
17 |
atttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaact |
116 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
12006115 |
atttgggagggtgtctttgtttgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggttgtaaagatagttggtgtaaact |
12006214 |
T |
|
| Q |
117 |
ttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgt |
216 |
Q |
| |
|
|||||||||| | |||||||||| ||||||| ||| | |||||| |||||||||||| || ||| ||| | || |||| | ||| ||| | |
|
|
| T |
12006215 |
ttttactttgatgggatcgtgtttcgttttacctgtgatatctttgatccctttaggttattcaagtgatggaaaaaaacttttgtttgaggtaaatcat |
12006314 |
T |
|
| Q |
217 |
gagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtac |
316 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| |||| ||| |||| |||||||| | | ||| | || || |||||||||||||||||||||| |
|
|
| T |
12006315 |
aagaagctggtttggtatgatttgaagagtgaagaagttaattacattgagggaattccaaatttcgatgaagcgatgatttgtgttggaagtcttgtac |
12006414 |
T |
|
| Q |
317 |
aaccttctttccc |
329 |
Q |
| |
|
||||| ||||| |
|
|
| T |
12006415 |
tgccttccttccc |
12006427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 9061146 - 9061274
Alignment:
| Q |
25 |
gggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactt |
124 |
Q |
| |
|
||||||||||| ||| |||||||||| || || ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
9061146 |
gggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatgaaagactatggatctagagatagttggtgtaaactttttactt |
9061245 |
T |
|
| Q |
125 |
tggctgaatcgtgtttcagtttacctttg |
153 |
Q |
| |
|
||| | |||||||||||| || ||||||| |
|
|
| T |
9061246 |
tggttaaatcgtgtttcaattcacctttg |
9061274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 10347929 - 10347793
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| ||||||||||||||| | ||| ||||| || | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10347929 |
tttgggagggtgtctttgtatcactgtcgattataaagatactaaaattgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaactt |
10347830 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttga |
154 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
10347829 |
tttactatggctgagtcgtgtttcgatttacctttga |
10347793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 8573510 - 8573689
Alignment:
| Q |
25 |
gggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactt |
124 |
Q |
| |
|
||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
8573510 |
gggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactt |
8573609 |
T |
|
| Q |
125 |
tggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
204 |
Q |
| |
|
| | | |||||||||||| | || ||| | | ||| |||| |||||||||||| || ||| |||||| |||||||||| |
|
|
| T |
8573610 |
tcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctagtgatggaagtaaggttctgttg |
8573689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 9292072 - 9291901
Alignment:
| Q |
27 |
gtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttg |
126 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
9292072 |
gtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttggtgtaaactttttactttg |
9291973 |
T |
|
| Q |
127 |
gctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
204 |
Q |
| |
|
| | ||||| | |||| |||||| | |||||||| |||| ||||||| || ||| |||||| |||||||||| |
|
|
| T |
9291972 |
gttaaatcgcggttca------ctttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgttg |
9291901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 16269233 - 16269109
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| ||| ||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| |
|
|
| T |
16269233 |
tttgggaggatgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggatatagagatagttggtgcaaactt |
16269134 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttca |
142 |
Q |
| |
|
||||| |||| | |||||||||||| |
|
|
| T |
16269133 |
tttaccttggttaaatcgtgtttca |
16269109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 10371996 - 10371867
Alignment:
| Q |
24 |
agggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttact |
123 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||| ||| ||||| |||||||||||||||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
10371996 |
agggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
10371897 |
T |
|
| Q |
124 |
ttggctgaatcgtgtttcagtttacctttg |
153 |
Q |
| |
|
|||| | |||| |||| ||||||||||| |
|
|
| T |
10371896 |
ttggttaaatcaagtttgggtttacctttg |
10371867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 9274665 - 9274557
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| || | | || |||| ||||||||||||||||||||||| | || |||||| |||||||||||| |
|
|
| T |
9274665 |
tttggaagggtgtctttgtatgactttgaattatcgaaatactgaatttgaagtttgggtgatgaaagaatatggttctacagatagttggtgtaaactt |
9274566 |
T |
|
| Q |
118 |
tttactttg |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
9274565 |
tttactttg |
9274557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 9061358 - 9061416
Alignment:
| Q |
219 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9061358 |
gaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattccta |
9061416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 8579532 - 8579677
Alignment:
| Q |
65 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgag |
164 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||||||| ||||||||| | |||||||| | || ||||| |||| | |||||||||| |||||| |
|
|
| T |
8579532 |
ttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaa |
8579631 |
T |
|
| Q |
165 |
gattttaggttattcgagcgatagaagtatggttctgttgcaagta |
210 |
Q |
| |
|
| ||| ||||||| || |||||||||| ||||||||| ||||| |
|
|
| T |
8579632 |
gcctttgtgttattctagtgatagaagtaaagttctgttggaagta |
8579677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 7612057 - 7611974
Alignment:
| Q |
44 |
tgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg |
127 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||||||||||||||| | |||||| ||||||||| | |||||||||| |
|
|
| T |
7612057 |
tgaattatgaaactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttactttgg |
7611974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 329
Target Start/End: Complemental strand, 9291865 - 9291755
Alignment:
| Q |
219 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaa |
318 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||| | || || |||||||||| ||||||| ||| | |
|
|
| T |
9291865 |
gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca |
9291766 |
T |
|
| Q |
319 |
ccttctttccc |
329 |
Q |
| |
|
||||| ||||| |
|
|
| T |
9291765 |
ccttccttccc |
9291755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 17566107 - 17566217
Alignment:
| Q |
44 |
tgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcag |
143 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||| ||||||||| | ||||| |||| || | | ||||||| |
|
|
| T |
17566107 |
tgaattatcaaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttaccttgggcgagtggcgtttcag |
17566206 |
T |
|
| Q |
144 |
tttacctttga |
154 |
Q |
| |
|
| ||||||||| |
|
|
| T |
17566207 |
tatacctttga |
17566217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 10347575 - 10347520
Alignment:
| Q |
333 |
gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagtttttg |
388 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
10347575 |
gaaggagaatcatccaagcaagagaaggtacttcttattgtttaactgagtttttg |
10347520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 16269012 - 16268953
Alignment:
| Q |
218 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta |
277 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
16269012 |
agaagttgttttggtatgatttgaagagtgaacgagttagttatgttgaaggaattccta |
16268953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 10371780 - 10371683
Alignment:
| Q |
219 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtac |
316 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||||||||||| | ||| ||||| |||| || |||||||||| |||||||||| |
|
|
| T |
10371780 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtac |
10371683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 8573725 - 8573783
Alignment:
| Q |
219 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta |
277 |
Q |
| |
|
||||||||||||||||||| | ||||||||| || |||||||||||||||||||||| |
|
|
| T |
8573725 |
gaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattccta |
8573783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 10347707 - 10347650
Alignment:
| Q |
219 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct |
276 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
10347707 |
gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcct |
10347650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 9065937 - 9065977
Alignment:
| Q |
331 |
aggaaggagaatcaaacaagcaagagaaggtacttcttatt |
371 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
9065937 |
aggaaggagaatcgaacaaccaagagaaggtacttcttatt |
9065977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 8579703 - 8579762
Alignment:
| Q |
218 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta |
277 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| || |||| |||||||||||| |
|
|
| T |
8579703 |
agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattccta |
8579762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 9065802 - 9065871
Alignment:
| Q |
208 |
gtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta |
277 |
Q |
| |
|
||||||| | ||||||| |||||||||||| | ||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
9065802 |
gtagatcatcagaagctcttttggtatgatttgaagagtgaacaagttatttatgttgaaggagttccta |
9065871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 10371648 - 10371616
Alignment:
| Q |
333 |
gaaggagaatcaaacaagcaagagaaggtactt |
365 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
10371648 |
gaaggagaatcatacaagcaagagaaggtactt |
10371616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 41966703 - 41967017
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
41966703 |
tttgggagggtgtctttgtatggttgtggattatcaaactagcgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactt |
41966802 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtg |
217 |
Q |
| |
|
|||||||||| | |||| ||||||| || | |||||| | | ||| || ||||||||| ||| |||||| |||| | |||||||||||||| | | || |
|
|
| T |
41966803 |
tttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgcaaggaattaatg |
41966902 |
T |
|
| Q |
218 |
a---gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgt |
314 |
Q |
| |
|
| ||| ||||||||||||||| | ||||||||| ||| |||||||||||||||||||| | ||| | ||||| ||||||||||||||||||| |
|
|
| T |
41966903 |
atttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtcttgt |
41967002 |
T |
|
| Q |
315 |
acaaccttctttccc |
329 |
Q |
| |
|
|| |||||| ||||| |
|
|
| T |
41967003 |
accaccttccttccc |
41967017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 45243843 - 45243657
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
45243843 |
tttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactt |
45243744 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
204 |
Q |
| |
|
|||||||||| | |||||||||||| ||| | |||| | |||||||| |||| |||||||||| ||| |||||| ||||||||| |
|
|
| T |
45243743 |
tttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgagtgatcgaagtaaagttctgttg |
45243657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 45230576 - 45230452
Alignment:
| Q |
21 |
ggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatg---tttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
45230576 |
ggaagagtgtctttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactt |
45230477 |
T |
|
| Q |
118 |
tttactttggctgaatcgtgtttca |
142 |
Q |
| |
|
|||||||||| | ||||||| |||| |
|
|
| T |
45230476 |
tttactttggttaaatcgtggttca |
45230452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 45238050 - 45237908
Alignment:
| Q |
62 |
aaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagcttt |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||| ||| | | ||| | || |
|
|
| T |
45238050 |
aaattgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatctgaaattgtt |
45237951 |
T |
|
| Q |
162 |
gaggattttaggttattcgagcgatagaagtatggttctgttg |
204 |
Q |
| |
|
|||| |||| ||||||| |||||| |||||| ||||||||| |
|
|
| T |
45237950 |
gaggcctttatgttattcaagcgatcgaagtaaagttctgttg |
45237908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 45230351 - 45230293
Alignment:
| Q |
219 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta |
277 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| | ||||| |||||||||||| |
|
|
| T |
45230351 |
gaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattccta |
45230293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 45243613 - 45243555
Alignment:
| Q |
219 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta |
277 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||| |
|
|
| T |
45243613 |
gaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattccta |
45243555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 37462636 - 37462447
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaa---ctgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaa |
114 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
37462636 |
tttgggaggctgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaa |
37462537 |
T |
|
| Q |
115 |
ctttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
204 |
Q |
| |
|
|||| |||| ||| | |||||||||||| || |||||||| | |||||||| |||| ||||||| || ||| |||||| |||| ||||| |
|
|
| T |
37462536 |
ctttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgttg |
37462447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 39427740 - 39427680
Alignment:
| Q |
65 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttacttt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| ||||||||| | |||||||| |
|
|
| T |
39427740 |
ttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttacttt |
39427680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 26574999 - 26574882
Alignment:
| Q |
24 |
agggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttact |
123 |
Q |
| |
|
||||||||||||||||| |||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26574999 |
agggtgtctttgtatgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttact |
26574900 |
T |
|
| Q |
124 |
ttggctgaatcgtgtttc |
141 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
26574899 |
gtggttaaatcgtgtttc |
26574882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 219
Target Start/End: Complemental strand, 561319 - 561165
Alignment:
| Q |
65 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgag |
164 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||| |||||| | | |||||||||| ||| || ||||||| |||||| | | | | || |
|
|
| T |
561319 |
ttgatgtttgggtaatgaaagaatatggatttagagatagttggtgtgtattgtttactttggaggaagtgtttttcagtagaccttttacaccatggaa |
561220 |
T |
|
| Q |
165 |
gattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgag |
219 |
Q |
| |
|
| |||||||||||| | |||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
561219 |
gcctttaggttattctggtgatagaagtaaagttctgttggaagtagattgtgag |
561165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 4615 - 4510
Alignment:
| Q |
18 |
tttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
117 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||| | |||||| |||||||||||| |
|
|
| T |
4615 |
tttgggaggatgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaactt |
4516 |
T |
|
| Q |
118 |
tttact |
123 |
Q |
| |
|
|||||| |
|
|
| T |
4515 |
tttact |
4510 |
T |
|
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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 36224520 - 36224454
Alignment:
| Q |
60 |
taaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttg |
126 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||| |
|
|
| T |
36224520 |
taaatttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttactttg |
36224454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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