View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19442_low_5 (Length: 400)
Name: NF19442_low_5
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19442_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 82 - 385
Target Start/End: Original strand, 479689 - 479992
Alignment:
| Q |
82 |
gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag |
181 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479689 |
gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag |
479788 |
T |
|
| Q |
182 |
taataataatataaacgcatatttacactcatgtacgtgagattgatttgtgttatcatggctctatatatgttgcagcattacattgaatcaaaattta |
281 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479789 |
taataataatataaacgcatatttacactcatgtacctgagattgatttgtgttatcatggctctatatatgttgcagcattacattgaatcaaaattta |
479888 |
T |
|
| Q |
282 |
ttttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcagtcacatttgtaatagcagcctttgtagggtaat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479889 |
ttttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcagtcacatttgtaatagcagcctttgtagggtaat |
479988 |
T |
|
| Q |
382 |
tact |
385 |
Q |
| |
|
|||| |
|
|
| T |
479989 |
tact |
479992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 249 - 385
Target Start/End: Original strand, 467492 - 467628
Alignment:
| Q |
249 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcag |
348 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||| ||||||||||||||||||| ||||| ||| |||| |||| |
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| T |
467492 |
atatattgcagcattacattgaatcaaaatttatattttgagggtctatatctttcttcttcttcagttgcaagtgccatttccaatcttcttccggcag |
467591 |
T |
|
| Q |
349 |
tcacatttgtaatagcagcctttgtagggtaattact |
385 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||| |
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| T |
467592 |
tcacatttgtaattgcagccttagtagggtaattact |
467628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 446508 - 446617
Alignment:
| Q |
271 |
atcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcagtcacatttgtaatagcagcctt |
370 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||| ||||||||||| |||||||||||||| ||| ||| |||||||| |||||||||||||||||||||| |
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| T |
446508 |
atcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatgaacaatcttattccagcaatcacatttgtaatagcagcctt |
446607 |
T |
|
| Q |
371 |
tgtagggtaa |
380 |
Q |
| |
|
|| ||||||| |
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|
| T |
446608 |
tgcagggtaa |
446617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 249 - 366
Target Start/End: Original strand, 474520 - 474637
Alignment:
| Q |
249 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcag |
348 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| ||| |||||||||| ||| |||| ||||| ||||| |||||||||||||| |||| ||| |||| |||| |
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|
| T |
474520 |
atatgatgcagcgttacattgactcaaaatctatattttgagggtctatatctatcttcttcttcaattgcaagtgccatgaccaatcttattcctgcag |
474619 |
T |
|
| Q |
349 |
tcacatttgtaatagcag |
366 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
474620 |
tcacatttgttatagcag |
474637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 466743 - 466835
Alignment:
| Q |
87 |
ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctct |
179 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| ||||||||||||||||| ||| | ||| | ||||||||||||||||| ||||||||||||| |
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| T |
466743 |
ttgacaggagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttccattctct |
466835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 383
Target Start/End: Original strand, 455212 - 455346
Alignment:
| Q |
249 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcag |
348 |
Q |
| |
|
|||| |||||||||||| || |||||||||||| |||||||||| ||| |||| | ||| ||||| ||||| ||||||| ||| ||| |||||||| |
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| T |
455212 |
atattttgcagcattactttatatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcag |
455311 |
T |
|
| Q |
349 |
tcacatttgtaatagcagcctttgtagggtaatta |
383 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||| |
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|
| T |
455312 |
tcacatttgttatagcaacctttgttgggtaatta |
455346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 455041 - 455121
Alignment:
| Q |
92 |
aggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc |
172 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||||| | | | ||| | ||||||||||||||||| |||||| |
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|
| T |
455041 |
aggagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc |
455121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 474232 - 474276
Alignment:
| Q |
91 |
taggagaaattctggctcttattccttaaatttaaggagtttttc |
135 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
474232 |
taggagaaactctgcctcttattccttaaatttaaggagtttttc |
474276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 446009 - 446108
Alignment:
| Q |
87 |
ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctagtaata |
186 |
Q |
| |
|
|||| |||||||| |||| ||| || |||||||| |||||||||||||| | | ||||| | || ||||||||| |||| |||| |||| |||||||||| |
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|
| T |
446009 |
ttgacaggagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttctagtaata |
446108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 385
Target Start/End: Complemental strand, 27491872 - 27491739
Alignment:
| Q |
252 |
tgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcagtca |
351 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| | | | |||| ||| ||||| ||| |||||||| ||||||| |||| ||| || ||||||||||| | |
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|
| T |
27491872 |
tgttgcagcattaccttggatcaaaatttactatcttggggtttatatctagtctcttcttcagttacaagtgcaatgtgcaatctagttccagcagtga |
27491773 |
T |
|
| Q |
352 |
catttgtaatagcagcctttgtagggtaattact |
385 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||| |
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|
| T |
27491772 |
catttgtaatagcagctttcgtagggtaactact |
27491739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 27493624 - 27493536
Alignment:
| Q |
92 |
aggagaaattctggctctt---attccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattct |
177 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| ||||||||||| | ||||| | || |||||| ||||||| ||||| ||||| |
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|
| T |
27493624 |
aggagaaattctggctcctcccattccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttctattct |
27493536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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