View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19443_high_3 (Length: 378)
Name: NF19443_high_3
Description: NF19443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19443_high_3 |
 | |
|
| [»] scaffold0060 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0060 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 71052 - 70920
Alignment:
| Q |
1 |
atgcgctcttttataaccaacatactacatctatatttcatatagtttccgatgtgggacatgtttgctctgaagctgtgaccatgcgcttataataatt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
71052 |
atgcactcttttataaccaacatactacatctatatttcatatagtttccgatgtgggacatgtttgctttgaaactgtgactatgcgcttataataatt |
70953 |
T |
|
| Q |
101 |
gtaatcgggagaatatttcaaatatatactcca |
133 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
70952 |
gtaatcgtgagaatatttcaaatatatactcca |
70920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 24128 - 24024
Alignment:
| Q |
29 |
atctatatttcatatagtttccgatgtgggacatgtttgctctgaagctgtgaccatgcgcttataataattgtaatcgggagaatatttcaaatatata |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24128 |
atctatatttcatatagtttccgatgtgggacatgtttgctttgaaactgtgactatgcgcttataataattgtaatcgtgagaatatttcaaatatata |
24029 |
T |
|
| Q |
129 |
ctcca |
133 |
Q |
| |
|
||||| |
|
|
| T |
24028 |
ctcca |
24024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 65412 - 65358
Alignment:
| Q |
268 |
tccactttttgaaagtttattcttaacctatatcaattatattctttcaactgtc |
322 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
65412 |
tccagtttttgaaagtttattcttaacctctatcaagtttattctttcaactgtc |
65358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27236 - 27203
Alignment:
| Q |
1 |
atgcgctcttttataaccaacatactacatctat |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27236 |
atgcgctcttttataaccaacatactacatctat |
27203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 8439508 - 8439640
Alignment:
| Q |
1 |
atgcgctcttttataaccaacatactacatctatatttcatatagtttccgatgtgggacatgtttgctctgaagctgtgaccatgcgcttataataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
8439508 |
atgcgctcttttataaccaacatactacatctatatttcatatagtttccgatgtgagatatgtttgctttgaaactgtgactatgcgcttataataatt |
8439607 |
T |
|
| Q |
101 |
gtaatcgggagaatatttcaaatatatactcca |
133 |
Q |
| |
|
||||| | ||||||||||||||||||||||||| |
|
|
| T |
8439608 |
gtaattgtgagaatatttcaaatatatactcca |
8439640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 262 - 363
Target Start/End: Original strand, 8440034 - 8440135
Alignment:
| Q |
262 |
tagaactccactttttgaaagtttattcttaacctatatcaattatattctttcaactgtcacaaattattgattcattccattagttgtttcagttaag |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8440034 |
tagaactccactttttgaaagtttattcttaacctatatcaattatattctttcaactgtcacaaattattgattcattccattagttgtttcagttaag |
8440133 |
T |
|
| Q |
362 |
gt |
363 |
Q |
| |
|
|| |
|
|
| T |
8440134 |
gt |
8440135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 8364398 - 8364452
Alignment:
| Q |
268 |
tccactttttgaaagtttattcttaacctatatcaattatattctttcaactgtc |
322 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
8364398 |
tccagtttttgaaagtttattcttaacctctatcaagtgtattctttcaactgtc |
8364452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 8348390 - 8348439
Alignment:
| Q |
273 |
tttttgaaagtttattcttaacctatatcaattatattctttcaactgtc |
322 |
Q |
| |
|
||||||||||||||||| |||||| | |||| | |||||||||||||||| |
|
|
| T |
8348390 |
tttttgaaagtttattcgtaacctctttcaagtgtattctttcaactgtc |
8348439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University