View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19443_high_4 (Length: 354)
Name: NF19443_high_4
Description: NF19443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19443_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 33707235 - 33706923
Alignment:
| Q |
18 |
ctaaggactcttctaag--cggatatacaatgaattcttagattgatgttcatggatttttcatttgatttatcttttatgaacaacatttacatttatt |
115 |
Q |
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| T |
33707235 |
ctaaggactcttttaagagcggatatacaatgaattcttagattgatgttcatggattt------------atcttttatgaacaacatttacatttatt |
33707148 |
T |
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| Q |
116 |
ggcattagtttcatattcactcaagatcgtgaattgattctatagacttgtattcacaccannnnnnnnnnctttt--ccatacaaccattgcttaatgc |
213 |
Q |
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| T |
33707147 |
ggcattagtttcatattcactcaagatcgtgaattgattctatagacttgtattcacaccatttttttttctttttttccatacaaccattgcttaatgc |
33707048 |
T |
|
| Q |
214 |
ttttggctatatttattgtgaaagacactcattttgtgcgctgtgttcttaacattggagtttgatgtttgtgttcaacacatcgtgtgttggttacact |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33707047 |
ttttggctatatttattgtgaaagacactcattttgtgcgatgtgttcttaacattggagtttgatgtttgtgttcaacacatcgtgtgttgattacact |
33706948 |
T |
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| Q |
314 |
ttaacagactttgggttgcttaaca |
338 |
Q |
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| T |
33706947 |
ttaacagactttgggttgcttaaca |
33706923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 32361626 - 32361563
Alignment:
| Q |
38 |
atatacaatgaattcttagattgatgttcatggatttttcatttgatttatcttttatgaacaac |
102 |
Q |
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| T |
32361626 |
atatacaatcaattcctagattcatgttgagggatttttc-tttgatttatcttgtatggacaac |
32361563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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