View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19443_low_1 (Length: 430)
Name: NF19443_low_1
Description: NF19443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19443_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 28784416 - 28784017
Alignment:
| Q |
18 |
atctaacagaatactcttctaacgtacaagcgatatgcagttaaattataggatgttacataagccttcatgttttgtcctttgtaatgggtagtggttt |
117 |
Q |
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| T |
28784416 |
atctaacagaatactcttctaacgtacaagcgatatgcagttaaattataggatgttacataagccttcatgttttgtcctttgtaatgggtagtggttt |
28784317 |
T |
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| Q |
118 |
gtatgtgtttatatataagctaccctagcctcgatttctcaaaaaataagagacttttttgttgtatcagaacaagtgaacaacataccctcattcgagg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28784316 |
gtatgtgtttatatataagctaccctagcctcgatttctcaaaaaataagagacttttttgttgtatcagaacaagtgaacaacatatcctcattcgagg |
28784217 |
T |
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| Q |
218 |
ctaaagggataaatgcttgtagcttaggccctacctgacatgccaactctagtacgcaaccnnnnnnnnnnnnnnnnnnnatgtattgttcattttgatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28784216 |
ctaaagggataaatgcttgtagcttaggccctacctgacatgccaactctagtacgcaacc-tttttatttttattttttatgtattgttcattttgatc |
28784118 |
T |
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| Q |
318 |
attgtataagcctcacacttttgtccttagtttaaagggaccaggttttgatactgtaataacagcacgcagttttacacagttctcaatctttgccgtt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
28784117 |
attgtataagcctcacacttttgtccttagtttaaagggacca------gatactctaataatagcacgcagttttacacagttctcaatctctgccgtt |
28784024 |
T |
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