View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19443_low_2 (Length: 381)
Name: NF19443_low_2
Description: NF19443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19443_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 25 - 373
Target Start/End: Complemental strand, 36342263 - 36341908
Alignment:
| Q |
25 |
ctagctccctgaacaaacgaattgccttgatattcttaaagtctaaacactaatgaagatggaagagatgccttgatatatcaatatgtgtaagatcagt |
124 |
Q |
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| T |
36342263 |
ctagctccctgaacaaacgaattgccttgatattcttaaagtctaatcactaatgaagatggaagagatgccttgatatatcaatatgtgtaagatcagt |
36342164 |
T |
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| Q |
125 |
gaactgattgctgcaattattgtgcagatattcgtctaacaatatttaactttcaattagagaattcaattgctc-------atcactgatgcaattttt |
217 |
Q |
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| T |
36342163 |
gaactgattgctgcaattattgtgcagatattcatctaacaatatttaactttgaattagagaattcaattgctcatcagtcatcactgatgcagttttt |
36342064 |
T |
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| Q |
218 |
ctatagattttcggttagtaatatttgaatttgaattgagaatatctctctgaatcagtgctgactttaatttgtgatcagccaagttattgttgtaacc |
317 |
Q |
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| T |
36342063 |
ctatagattttcagttagcaatatttgaatttgaattgagaatatctctctgaatcagtgctgactttaatttgtgatcagccaagttattgttgtaacc |
36341964 |
T |
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| Q |
318 |
tgtatataattgagaatatcgcatgcttcctctttgtttccaatttggcctatgct |
373 |
Q |
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| T |
36341963 |
tgtatataattgagaatatcacatgcttcctctttgtttccaatttggcctatgct |
36341908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 91 - 325
Target Start/End: Complemental strand, 39865504 - 39865270
Alignment:
| Q |
91 |
gatgccttgatatatcaatatgtgtaagatcagtgaactgattgctgcaattattgtgcagatattcgtctaacaatatttaactttcaattagagaatt |
190 |
Q |
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| T |
39865504 |
gatgccttgatatatcaatatgtgtaagatcagtgaactgatttctgcaattattgtgcagatattcatctaacagaatttgtctttgaattagataatt |
39865405 |
T |
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| Q |
191 |
caattgctcatcactgatgcaatttttctatagattttcggttagtaatatttgaatttgaattgagaatatctctctgaatcagtgctgactttaattt |
290 |
Q |
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| T |
39865404 |
caattgccggttactgatgcagttattgtatagattttcagttagcgatatttgaatttgaattgagaatatctctctgaatcagtgctgactttaattt |
39865305 |
T |
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| Q |
291 |
gtgatcagccaagttattgttgtaacctgtatata |
325 |
Q |
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| T |
39865304 |
gcgatcagccaagttattgttgtaacctgtatata |
39865270 |
T |
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