View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19443_low_5 (Length: 337)
Name: NF19443_low_5
Description: NF19443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19443_low_5 |
 | |
|
| [»] scaffold0060 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0060 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 27801 - 27503
Alignment:
| Q |
9 |
gattattctaatgtgtgtcttgactcccttttccaactagatttgttgttttcttgatccacacttggccgccatttctattagaggcaattgttagttt |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27801 |
gattattctaatgtgtgtcttgattcccttttccaactagatttgttgttttcttgatccacacttggccgccacttctattagaggcaattgttagttt |
27702 |
T |
|
| Q |
109 |
aagtcacaactgtctaatgtgaactcttctttatgcatcacttggttgtttgaagatttgtggttttgaaacttgcccttaatatgttgctaagaatnnn |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
27701 |
aaatcacaactgtctaatgtgaactcttctttatgcatcacttggttgtttgaagatttgtggttttgaaacatgcccttaacatgttgctaggaa---- |
27606 |
T |
|
| Q |
209 |
nnnnntagaaaaattcaacatactatctccgatattatataataaagaaagataaagtcaacaaaaattaatatatttgattcaaattttaaactgaccc |
308 |
Q |
| |
|
|| |||||| ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27605 |
-----taaaaaaatacaacatactatctccagtattatatataaaagaaagttaaagtcaacaaaaattaatatatttaattcaaattttaaactgaccc |
27511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 71617 - 71319
Alignment:
| Q |
9 |
gattattctaatgtgtgtcttgactcccttttccaactagatttgttgttttcttgatccacacttggccgccatttctattagaggcaattgttagttt |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
71617 |
gattattctaatgtgtgtcttgattcccttttccaactagatttgttgttttcttgatccacacttggccgccacttctattagaggcaattgttagttt |
71518 |
T |
|
| Q |
109 |
aagtcacaactgtctaatgtgaactcttctttatgcatcacttggttgtttgaagatttgtggttttgaaacttgcccttaatatgttgctaagaatnnn |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
71517 |
aaatcacaactgtctaatgtgaactcttctttatgcatcacttggttgtttgaagatttgtggttttgaaacatgcccttaacatgttgctaggaa---- |
71422 |
T |
|
| Q |
209 |
nnnnntagaaaaattcaacatactatctccgatattatataataaagaaagataaagtcaacaaaaattaatatatttgattcaaattttaaactgaccc |
308 |
Q |
| |
|
|| |||||| ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
71421 |
-----taaaaaaatacaacatactatctccagtattatatataaaagaaagttaaagtcaacaaaaattaatatatttaattcaaattttaaactgaccc |
71327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 4479660 - 4479627
Alignment:
| Q |
266 |
tcaacaaaaattaatatatttgattcaaatttta |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
4479660 |
tcaacaaaaattaatatatttgattcaaaattta |
4479627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 9238288 - 9238255
Alignment:
| Q |
266 |
tcaacaaaaattaatatatttgattcaaatttta |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
9238288 |
tcaacaaaaattaatatatttgattcaaaattta |
9238255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University