View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19443_low_8 (Length: 251)
Name: NF19443_low_8
Description: NF19443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19443_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 22726956 - 22727189
Alignment:
| Q |
18 |
gcaactatgatcaaggtttattgttcatcatgtgtaagttatatttcatgatctgtgatgaaaattaacattttgtcctagaaaaattataaacttttgt |
117 |
Q |
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| T |
22726956 |
gcaactatgatcaaggtttattgttcatcatgtgtaaattatatttcatgatccgtgatgaaaattaacattttgtccttgaaaaatttcaaacttttgt |
22727055 |
T |
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| Q |
118 |
gtttccatgt-aaaaaaggtacgctgtcgtccctgtaaaattttactgcatgcattattagtccccaacagttaagtcaaaatgtagttttgaacgattt |
216 |
Q |
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| T |
22727056 |
gtttccctgtaaaaaaaggtacgctgtcgtccctgtaaaattttgttgcatgcattattagt-cccaacagttaagtcaaaatgtagttttgaacgattt |
22727154 |
T |
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| Q |
217 |
ttaagcatacatgtttatgccattatatgaagttt |
251 |
Q |
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| T |
22727155 |
taaagcatacatgcttacgcaattatatgaagttt |
22727189 |
T |
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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 39906207 - 39906276
Alignment:
| Q |
18 |
gcaactatgatcaaggtttattgttcatcatgtgtaagttatatttcatgatctgtgatgaaaattaaca |
87 |
Q |
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| T |
39906207 |
gcaactatgatcaaggtttattgttcatcatgtgtaaattatatttcatgatctgtgatgaaaattaaca |
39906276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 25019608 - 25019539
Alignment:
| Q |
18 |
gcaactatgatcaaggtttattgttcatcatgtgtaagttatatttcatgatctgtgatgaaaattaaca |
87 |
Q |
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| T |
25019608 |
gcaactatgatcaaggtttattgctcatcatgtgtatattacatttcatgatatgtgatgaatattaaca |
25019539 |
T |
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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 42258224 - 42258293
Alignment:
| Q |
18 |
gcaactatgatcaaggtttattgttcatcatgtgtaagttatatttcatgatctgtgatgaaaattaaca |
87 |
Q |
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| T |
42258224 |
gcaactatgatcaaggtttattattcatcatgtgtaaattatatttcatgatctgtgatgaaaattaaca |
42258293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 22391470 - 22391523
Alignment:
| Q |
20 |
aactatgatcaaggtttattgttcatcatgtgtaagttatatttcatgatctgt |
73 |
Q |
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| T |
22391470 |
aactatgatcaaggtttattgttcattatgagtaaattatatttcatgatctgt |
22391523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 40887220 - 40887163
Alignment:
| Q |
18 |
gcaactatgatcaaggtttattgttcatcatgtgtaagttatatttcatgatctgtga |
75 |
Q |
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| T |
40887220 |
gcaactattatcgaagtttattgtttatgatgtgtaaattatatttcatgatctgtga |
40887163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 2766953 - 2767008
Alignment:
| Q |
24 |
atgatcaaggtttattgttcatcatgtgtaagttatatttcatgatctgtgatgaa |
79 |
Q |
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|||||| | ||||||||||||| |||||||| ||||| |||||||| ||||||||| |
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| T |
2766953 |
atgatcgaagtttattgttcataatgtgtaaattatagttcatgatttgtgatgaa |
2767008 |
T |
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