View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_high_10 (Length: 514)
Name: NF19444_high_10
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 53665132 - 53665371
Alignment:
| Q |
15 |
cattcagaactgacaactttgatattacaacaactctctgtgtctcccatcacatgaacatgaagaaaatcaaaagttgtgagttgtgtctgaaatggaa |
114 |
Q |
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| T |
53665132 |
cattcagaactgatagctttgatattgcaacaactctctgtgtctcccatcacatgaacatgaagaaaatcaaaagatgtgagttgtgtctgaaatggaa |
53665231 |
T |
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| Q |
115 |
attgtatataaaactgaagctgatgactattgcaaaggagtgcaacgcgcatctatatttatttataattgatgtggattatacacacaacttcaacatt |
214 |
Q |
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| T |
53665232 |
attgtatataaaactgaagctgatgactattgcaaaggagtgcaatgcgcatctatatttatttatatttgatgtggattatacgcacaacttcaacatt |
53665331 |
T |
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| Q |
215 |
ttgattatatcaccgtttcttgtccaagaatccaccatcc |
254 |
Q |
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| T |
53665332 |
ttgattatatcaccgtttcttgtccaagaatccaccatcc |
53665371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 267 - 503
Target Start/End: Original strand, 53665400 - 53665631
Alignment:
| Q |
267 |
tactagtaaagtagtaatgtcgatgaatgcaaggaattataatgctttaattatgtaatcctttgatggcatcactaccaccaaacagtagtgccccttg |
366 |
Q |
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| T |
53665400 |
tactggtaaagtagtaatgtcgatgaatgcaaggaattataatgctttaattatgtaatcctttgatggcatcactaccaccaaacagtagtgccccttg |
53665499 |
T |
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| Q |
367 |
tttctttcgctaggcagatacaactaaatagcatgcactccatgttgttgacagcggaaggcaacaatgacgaatatttgaaatgatccaaataaaatac |
466 |
Q |
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| T |
53665500 |
tttctttcgctaggcagatacaactaaatagcatgcactccatgttgttgacagcggaaggcaacaatgacgaatatttcaaatgatcc-----aaatac |
53665594 |
T |
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| Q |
467 |
aagtcatccagatcaattgaaatcaattacgaatatt |
503 |
Q |
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| T |
53665595 |
aagtcatccagatcaattgaaatcaattacgaatatt |
53665631 |
T |
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