View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_high_12 (Length: 509)
Name: NF19444_high_12
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 47180778 - 47181110
Alignment:
| Q |
11 |
cacagacagcagtgagccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggattacttagccttggattcggctttgatcttcg |
110 |
Q |
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| T |
47180778 |
cacagacagcagtgagccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggattacttagccttggattcggctttgatcttcg |
47180877 |
T |
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| Q |
111 |
agagcgttgaacactatcatcactcttcttcttctgatcattctcaatctctaccacattcttctcctcaccgttactcgctgtcgtcgccgcagaagct |
210 |
Q |
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| T |
47180878 |
agagcgttgaacactatcatcactcttcttcttctgatcattctcaatctctaccacattcttctcctcaccgttactcgctgtcgtcgccgcagaagct |
47180977 |
T |
|
| Q |
211 |
tcatcaaccttaatcctgttagtttgggcacctgaacccttgtttgacgaggcttggcgaccaatcacacatcccatttcttgaaactatgcttcattgt |
310 |
Q |
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| T |
47180978 |
tcatcaaccttaatcctgttagtttgggcacctgaacccttgtttgacgaggcttggcgaccaatcacacatcccatttcttgaaactatgcttcattgt |
47181077 |
T |
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| Q |
311 |
cacttagcattgcttcaaattagaataagaatt |
343 |
Q |
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| T |
47181078 |
cacttagcattgcttcaaattagaataagaatt |
47181110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 369 - 492
Target Start/End: Original strand, 47181152 - 47181275
Alignment:
| Q |
369 |
ggagtgagagagtgagttagtgtaataatggtaaataatgtggagtagttgtagtaatagagagtggttgtgtatgtagtgtttgttttatggcctcaga |
468 |
Q |
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| T |
47181152 |
ggagtgagagagtgagttagtgtaataatggtaaataatgtggagttgttgtagtaatagagagtggttgtgtatgtagtgtttgttttatggcctcaga |
47181251 |
T |
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| Q |
469 |
caagaagaaacgaaagtgagatct |
492 |
Q |
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| T |
47181252 |
caagaagaaaagaaagtgagatct |
47181275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 49216107 - 49216162
Alignment:
| Q |
25 |
agccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggatt |
80 |
Q |
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| T |
49216107 |
agccaagatggccacccagcagccacttgttcaccatgtatatggttaggtggatt |
49216162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 6700202 - 6700130
Alignment:
| Q |
25 |
agccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggattacttagccttggattcg |
97 |
Q |
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|||||||| ||||| ||||| ||||||||||||||| | | || |||||||||||||| | ||| ||||||| |
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| T |
6700202 |
agccaagaaggccaaccagctgcaacctgttcaccatgaacattattaggtggattactcaacctcggattcg |
6700130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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