View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_high_14 (Length: 470)
Name: NF19444_high_14
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_14 |
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| [»] chr8 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 210 - 470
Target Start/End: Complemental strand, 6238077 - 6237825
Alignment:
| Q |
210 |
actgtagttgaagatattgaagtaaacggaaaaaagggggagagattgtgtttaatcaaattatggaacctcctcccataacattctttaatgttgattg |
309 |
Q |
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| T |
6238077 |
actgtagttgaagatattgaagtaaacggaaaaaagggggagagattgtgtttaatgaaattatggaacctcctcccataacattctttaatgttgattg |
6237978 |
T |
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| Q |
310 |
ttgaaccaactctttggacttattttaaatgcaaaacatcaataaaagatgtttgtgatgagaattgagatgtttgcctcatttctgcacaaaaatttaa |
409 |
Q |
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| T |
6237977 |
ttgaaccaactctttggacttattttaaatgcaaaacatcaataaaagatgtttgtgat-------gagatgtttgcctcatttctgcacaaaaatttaa |
6237885 |
T |
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| Q |
410 |
atgatacac-taccatcatttggtgataattttctttttcatatttacattatatttttatt |
470 |
Q |
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| T |
6237884 |
atgatacacgtaccatcatttggtgataattttc--tttcatatttacattatatttttatt |
6237825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 6238267 - 6238171
Alignment:
| Q |
20 |
tcccctgcctagttcatcaaattttaggaaggcattatttatgcatcaaatatttgctagttcctgaatttcctaatcgtcaatcaaatttaaaaag |
116 |
Q |
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| T |
6238267 |
tcccctgcctagttcatcaaattttaggaaggcattatttatgcatcaaatatttgctagttcctgaatttcctaatcatcaatcaaatttaaaaag |
6238171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 6222384 - 6222305
Alignment:
| Q |
20 |
tcccctgcctagttcatcaaattttaggaaggcattatttatgcatcaaatatttgctagttcctgaatttcctaatcgtc |
100 |
Q |
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| T |
6222384 |
tcccctgcctagttcatcaaattttaggaaggcattgtttatgcat-aaatatttgatagttcctgaatttcccaatcgtc |
6222305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 470
Target Start/End: Original strand, 35050226 - 35050262
Alignment:
| Q |
434 |
ataattttctttttcatatttacattatatttttatt |
470 |
Q |
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| T |
35050226 |
ataattttctctttcatatttacattatatttttatt |
35050262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 2159345 - 2159301
Alignment:
| Q |
426 |
atttggtgataattttctttttcatatttacattatatttttatt |
470 |
Q |
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| T |
2159345 |
attttgtgataattttctttctcatacttatattatatttttatt |
2159301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 44962216 - 44962177
Alignment:
| Q |
431 |
gtgataattttctttttcatatttacattatatttttatt |
470 |
Q |
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| T |
44962216 |
gtgataattttctttttcatacttatattatatttttatt |
44962177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 32464647 - 32464609
Alignment:
| Q |
432 |
tgataattttctttttcatatttacattatatttttatt |
470 |
Q |
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| T |
32464647 |
tgataattttctctttcatacttacattatatttttatt |
32464609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Complemental strand, 33578339 - 33578310
Alignment:
| Q |
439 |
tttctttttcatatttacattatattttta |
468 |
Q |
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| T |
33578339 |
tttctttttcatatttacattatattttta |
33578310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 42530266 - 42530229
Alignment:
| Q |
431 |
gtgataattttctttttcatatttacattatattttta |
468 |
Q |
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| T |
42530266 |
gtgataattttctttttcatattcacattatgttttta |
42530229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 12306166 - 12306129
Alignment:
| Q |
431 |
gtgataattttctttttcatatttacattatattttta |
468 |
Q |
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| T |
12306166 |
gtgataattttctctttcatacttacattatattttta |
12306129 |
T |
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