View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_high_16 (Length: 457)
Name: NF19444_high_16
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 3420193 - 3420610
Alignment:
| Q |
17 |
aataagaacattcagctttcaaattgaagaggtaaatataacgattcatcgtaattttttgaatttatgatttctctttcttacggtgtgattgaaattg |
116 |
Q |
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| T |
3420193 |
aataagaacattcagctttcaaattgaagaggtaaatataacgattcatcgtaattttttgaatttatgatttctctttcttacggtgtgattgaaattg |
3420292 |
T |
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| Q |
117 |
taagtgaaaggttttgagttggagaaatcgatgttgatatctgagtagtgttcatgttcgtgttcggtggcggttttgctatgagactgcaccggaacga |
216 |
Q |
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| T |
3420293 |
taagtgaaaggttttgagttggagaaatcgatgttgatatctgagtagtgttcatgttcgtgttcggtggcggttttgctatgagactgcaccggaacga |
3420392 |
T |
|
| Q |
217 |
cgccatctgcggtggtgccgggactgttttgctctggcaagtctgttttagtgttgacagtgacgaaatcatcgatttcggggtacgagtagtgagagta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3420393 |
cgccatctgcggtggtgccgggactgttttgctctggcaagtctgttttagtgttgacagtgacgaaatcatcgatttcggggtacgagtagtgagagta |
3420492 |
T |
|
| Q |
317 |
attgagatcagggaatttagggtttgaaggagtttggagaagccaggaagcagcttctgcttcttccgtggtggcgtcgtgatcattttcagagaagaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3420493 |
attgagatcagggaatttagggtttgaaggagtttggagaagccaggaagcagcttctgcttcttccgtggtggcgtcgtgatcattttcagagaagaat |
3420592 |
T |
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| Q |
417 |
gattgttgctggctgttc |
434 |
Q |
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|||||||||||||||||| |
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| T |
3420593 |
gattgttgctggctgttc |
3420610 |
T |
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