View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19444_high_2 (Length: 801)
Name: NF19444_high_2
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 718; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 20 - 797
Target Start/End: Original strand, 33050314 - 33051091
Alignment:
| Q |
20 |
tatggaacccacttgaagccaggacaccacagagaccacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaagggg |
119 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33050314 |
tatggaacccacttgaagccatgccaccacagagaccacacagttaagcttgtcaaagagaaaagaagaaacagagttgcaaggaagaggagtcaagggg |
33050413 |
T |
|
| Q |
120 |
aagccgtcacagggaggctaccacgcacgtaaggaggaaaacaccactcatgcaattcataacatttttccaaaacacgttatccttaaccaccttttcc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33050414 |
aagccgtcacagggaggctaccacgcacgtaaggaggaaaacacccctcatgcaattcataacatttttccaaaacacgttatccttaaccgccttttcc |
33050513 |
T |
|
| Q |
220 |
acaatgatcccatctttactctttgctagtttaccggacttccactctttcaatgtgaacataataataagtgctctataattgtaatgcaaacactcta |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33050514 |
acaatgatcccatctttactctttgcaagtttaccggacttccactctttcaatgtgaacataataataagtgctctataattgttatgcaaacactcta |
33050613 |
T |
|
| Q |
320 |
atgtcaagtaagatgctgcaaaacgagtcatcgcaggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaa |
419 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050614 |
atttcaagtaagatgctgcaaaacgagtcattgcaggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaa |
33050713 |
T |
|
| Q |
420 |
tattgtgatattttttatcgctagcaatcatatcttgtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050714 |
tattgtgatattttttatcgctagcaatcatatcttgtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtc |
33050813 |
T |
|
| Q |
520 |
caatacaacttctcccacttttgcatcaacaattacccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaaccttta |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33050814 |
caatacaacttctcccacttttgcatcaacaattacccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaaccttaa |
33050913 |
T |
|
| Q |
620 |
caacaatatcatcttaaaaacattgtcggcagtttttgcttatgttagacgcgtcaatagatttcttaaaaatggctcgctcgagagtattcaccaaaaa |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33050914 |
caacaatatcatcttaaaaacattgtcggcagtttttgcttatgatagacgcatcaatagatttcttaaaaatggctcgcttgagagtattcaccaaaaa |
33051013 |
T |
|
| Q |
720 |
gttcagcatagttcttcaagtattggtccaaccgtcggtcattatggtgtattctaatttcttcttaacaaccctatg |
797 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33051014 |
gttcagtatagttctttaagtattggtccaaccgtcggtcattatggtgtattctaatttcttcttaacaaccctatg |
33051091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 673; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 54 - 797
Target Start/End: Original strand, 42807121 - 42807854
Alignment:
| Q |
54 |
accacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgtaagg |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42807121 |
accacacagttaagcttgtcaaagagaaaagaagaaacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgtaagg |
42807220 |
T |
|
| Q |
154 |
aggaaaacaccactcatgcaattcataacatttttccaaaacacgttatccttaaccaccttttccacaatgatcccatctttactctttgctagtttac |
253 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42807221 |
aggaaaacacccctcatgcaattcataacatttttccaaaacacgttatccttaaccgccttttccacaatgatcccatctttactctttgcaagtttac |
42807320 |
T |
|
| Q |
254 |
cggacttccactctttcaatgtgaacataataataagtgctctataattgtaatgcaaacactctaatgtcaagtaagatgctgcaaaacgagtcatcgc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
42807321 |
cggacttccactctttcaatgtgaacataataataagtgctctataattgtaatgcaaacactctaatatcaagtaagatgctgcaaaacgagtcattgc |
42807420 |
T |
|
| Q |
354 |
aggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaatattgtgatattttttatcgctagcaatcatatc |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42807421 |
aggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaatatt----------ttatcgctagcaatcatatc |
42807510 |
T |
|
| Q |
454 |
ttgtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatcaacaatt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42807511 |
ttgtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatcaacaatt |
42807610 |
T |
|
| Q |
554 |
acccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtt |
653 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42807611 |
acccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtt |
42807710 |
T |
|
| Q |
654 |
tttgcttatgttagacgcgtcaatagatttcttaaaaatggctcgctcgagagtattcaccaaaaagttcagcatagttcttcaagtattggtccaaccg |
753 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42807711 |
tttgcttatgttagacgcgtcaatagatttcttaaaaatggctcgcttgagagtattcaccaaaaagttcagtatagttcttcaagtattggtccaaccg |
42807810 |
T |
|
| Q |
754 |
tcggtcattatggtgtattctaatttcttcttaacaaccctatg |
797 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42807811 |
tcggtcattatggtgtattctaatttcttcttaacgaccctatg |
42807854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 148 - 797
Target Start/End: Original strand, 42764859 - 42765494
Alignment:
| Q |
148 |
gtaaggaggaaaacaccactcatgcaattcataacatttttccaaaacacgttatccttaaccaccttttccacaatgatcccatctttactctttgcta |
247 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
42764859 |
gtaagggggaaaacacccctcatgcaaatcataacatttttccaaaa---gttatccttaaccgccttttccacaatgatcccatctttactctttgcaa |
42764955 |
T |
|
| Q |
248 |
gtttaccggacttccactctttcaatgtgaacataataataagtgctctataattgtaatgcaaacactctaatgtcaagtaagatgctgcaaaacgagt |
347 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |
|
|
| T |
42764956 |
gtttaccggacttccattctttcaatgtgaacataataataagtgctctgtaattgtcatgcaaacactctaatgtcaagtaag---------------t |
42765040 |
T |
|
| Q |
348 |
catcgcaggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaatattgtgatattttttatcgctagcaat |
447 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
42765041 |
cgttgcaggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttgtgtaaatgaatgttgtgatattttttatcactataaat |
42765140 |
T |
|
| Q |
448 |
catatctt-gtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatc |
546 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42765141 |
catatctttgtggaaagaaatcttctcaaaaaatttcaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatc |
42765240 |
T |
|
| Q |
547 |
aacaattacccatcaactttgta--atttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattg |
644 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42765241 |
aacaattacccatcaactttgtataattttctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattg |
42765340 |
T |
|
| Q |
645 |
tcggcagtttttgcttatgttagacgcgtcaatagatttcttaaaaatggctcgctcgagagtattcaccaaaaagttcagcatagttctt-caagtatt |
743 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
42765341 |
tcggcagtttttgcttatgttagatgcgtcaatagatttcctaaaaatggctcgcttgagagtattcaccaaaaagttcagtatagttcttccaagtatt |
42765440 |
T |
|
| Q |
744 |
ggtccaaccgtcggtcattatggtgtattctaatttcttcttaacaaccctatg |
797 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42765441 |
ggtccaaccgtcggtcattatggtgtattttaatttcttcttaacaaccctatg |
42765494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 42764340 - 42764453
Alignment:
| Q |
20 |
tatggaacccacttgaagccaggacaccacagagaccacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaagggg |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
42764340 |
tatggaacccacttgaagccatcacaccacagagaccacacagttaagcttgtcaaagagaaaagaa---acagagttgcaaggaagaggagtcaggggg |
42764436 |
T |
|
| Q |
120 |
aagccgtcacagggagg |
136 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
42764437 |
aagccgtcacagggagg |
42764453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 527
Target Start/End: Complemental strand, 15658881 - 15658821
Alignment:
| Q |
467 |
tcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaa |
527 |
Q |
| |
|
|||||||||||| |||||||| | ||| || |||||||| |||||||||||||||||||| |
|
|
| T |
15658881 |
tcttctcaaaatcctccaacatcaagtcaatacaatgagcagcacatggtgtccaatacaa |
15658821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University