View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19444_high_22 (Length: 387)

Name: NF19444_high_22
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19444_high_22
NF19444_high_22
[»] chr8 (10 HSPs)
chr8 (1-372)||(5656433-5656803)
chr8 (16-218)||(5686055-5686257)
chr8 (16-218)||(5718202-5718404)
chr8 (54-153)||(5638195-5638294)
chr8 (54-153)||(5651393-5651492)
chr8 (90-153)||(5602098-5602161)
chr8 (90-153)||(5602684-5602747)
chr8 (90-153)||(5602946-5603009)
chr8 (90-153)||(5632361-5632424)
chr8 (90-153)||(5638459-5638522)
[»] scaffold0013 (1 HSPs)
scaffold0013 (59-174)||(88552-88667)
[»] chr4 (2 HSPs)
chr4 (57-185)||(106808-106936)
chr4 (72-156)||(166950-167034)
[»] chr7 (1 HSPs)
chr7 (67-155)||(13055241-13055329)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 5656803 - 5656433
Alignment:
Q  1 tgtatatacttccatttattatttttgtatctttaattaagttcttatttatgttttggcaggaactcacgggagtattcatgaaaaactgcatgctgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5656803 tgtatatacttccatttattatttttgtatctttaattaagttcttatttatgttt-ggcaggaactcacgggagtattcatgaaaaactgcatgctgca 5656705  T
Q  101 ttacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgtagacgaattctattgctttcctctacagtttaaaatgtgagcttgagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5656704 ttacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgtagacgaattctattgctttcctctacagtttaaaatgtgagcttgagc 5656605  T
Q  201 acaaaaaggaaaagccatatcaataaagaatcaggaaatccggctgataacctactatcaaactatctacaaaaggaaaatacatcattatgatataatg 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5656604 acaaaaaggaaaagccatatcaataaagaatcaggaaaaccggctgataacctactatcaaactatctacaaaaggaaaatacatcattatgatataatg 5656505  T
Q  301 tctgtttgggttcaacaatgataaaaatcgaattttaatgaatttattatgtaaaattgattctgatcaaaa 372  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5656504 tctgtttgggttcaacaatgataaaaatcaaattttaatgaatttattatgtaaaattgattctgatcaaaa 5656433  T

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Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 5686257 - 5686055
Alignment:
Q  16 ttattatttttgtatctttaattaagttcttatttatgttttggcaggaactcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||    
T  5686257 ttattatttttgtatctttaattaagttcttatttatgttttggcaggaactcacagcagtattcatgaaaaactgcatgctgcattacgccatgtttag 5686158  T
Q  116 agatatatttccaatgtgggctctagctgaatatcgtagacgaattctattgctttcctctacagtttaaaatgtgagcttgagcacaaaaaggaaaagc 215  Q
    ||||||||| |||||||||||||||||||||||||||| | | ||| | |||| ||||  | |||||| ||||||||||||||||||||||||||||| |    
T  5686157 agatatattcccaatgtgggctctagctgaatatcgtaaagggattatgttgccttccattgcagtttgaaatgtgagcttgagcacaaaaaggaaaaac 5686058  T
Q  216 cat 218  Q
    |||    
T  5686057 cat 5686055  T

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Target: chr8; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 5718404 - 5718202
Alignment:
Q  16 ttattatttttgtatctttaattaagttcttatttatgttttggcaggaactcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatag 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||    
T  5718404 ttattatttttgtatctttaattaagttcgtatttatgttttggcaggaactcacagcagtattcatgaaaaactgcatgctgcattacgcaatgtttag 5718305  T
Q  116 agatatatttccaatgtgggctctagctgaatatcgtagacgaattctattgctttcctctacagtttaaaatgtgagcttgagcacaaaaaggaaaagc 215  Q
    ||||||||| |||||||||||||||||||||||||||| | | ||| | |||| ||||  | |||||| ||||||||||||||||||||||||||||| |    
T  5718304 agatatattcccaatgtgggctctagctgaatatcgtaaagggattatgttgccttccattgcagtttgaaatgtgagcttgagcacaaaaaggaaaaac 5718205  T
Q  216 cat 218  Q
    |||    
T  5718204 cat 5718202  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 5638294 - 5638195
Alignment:
Q  54 ttttggcaggaactcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgta 153  Q
    |||||||||||||| || || | || | ||||||  |||||| |||||||  | |||||||||||||  |||||||||| ||||||||||||||||||||    
T  5638294 ttttggcaggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgta 5638195  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 5651492 - 5651393
Alignment:
Q  54 ttttggcaggaactcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgta 153  Q
    |||||||||||||| || || | || | ||||||  |||||| |||||||  | |||||||||||||  |||||||||| ||||||||||||||||||||    
T  5651492 ttttggcaggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgta 5651393  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 5602098 - 5602161
Alignment:
Q  90 tgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgta 153  Q
    |||||| |||||||  | |||||||||||||  |||||||||| ||||||||||||||||||||    
T  5602098 tgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgta 5602161  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 5602684 - 5602747
Alignment:
Q  90 tgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgta 153  Q
    |||||| |||||||  | |||||||||||||  |||||||||| ||||||||||||||||||||    
T  5602684 tgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgta 5602747  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 5602946 - 5603009
Alignment:
Q  90 tgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgta 153  Q
    |||||| |||||||  | |||||||||||||  |||||||||| ||||||||||||||||||||    
T  5602946 tgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgta 5603009  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 5632424 - 5632361
Alignment:
Q  90 tgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgta 153  Q
    |||||| |||||||  | |||||||||||||  |||||||||| ||||||||||||||||||||    
T  5632424 tgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgta 5632361  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 5638522 - 5638459
Alignment:
Q  90 tgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgta 153  Q
    |||||| |||||||  | |||||||||||||  |||||||||| ||||||||||||||||||||    
T  5638522 tgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgta 5638459  T

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Target: scaffold0013 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 88667 - 88552
Alignment:
Q  59 gcaggaactcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgtagacga 158  Q
    |||||||||||| ||||||||||||||||| || ||| |||||||| | ||||||||| |||| |||||| |||||||||| ||||| |||||||||||     
T  88667 gcaggaactcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagaaatatttttccattgtgggctctggctgagtatcgtagacgg 88568  T
Q  159 attctattgctttcct 174  Q
     ||| ||||| |||||    
T  88567 gttccattgccttcct 88552  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 106808 - 106936
Alignment:
Q  57 tggcaggaactcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgtagac 156  Q
    ||||||||| |||| ||||||||||||||||| || ||| |||||||| | |||||||||||||| |  ||  ||||||||||||| || ||||||||||    
T  106808 tggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagtatcgtagac 106907  T
Q  157 gaattctattgctttcctctacagtttaa 185  Q
    |  ||| ||||| |||| || ||||||||    
T  106908 gggttccattgccttccactgcagtttaa 106936  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 166950 - 167034
Alignment:
Q  72 ggagtattcatgaaaaactgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgtagac 156  Q
    |||| |||||||||||| || ||| |||||||| | |||||||||||||| || ||| ||||||||||| | || ||||||||||    
T  166950 ggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagac 167034  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 13055241 - 13055329
Alignment:
Q  67 tcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgtaga 155  Q
    |||| ||||||||| | ||||| || ||| |||||||  | |||||||||||||| || ||| |||||||| ||||||| |||||||||    
T  13055241 tcacaggagtattcttcaaaaattgtatgttgcattatacaatgtatagagatattttcccattgtgggctttagctgagtatcgtaga 13055329  T

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