View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_high_29 (Length: 341)
Name: NF19444_high_29
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 4672643 - 4672331
Alignment:
| Q |
18 |
gttaataggggagttgatcatttgcattggagaattcgtttgtaagtttggttttttgtatttgtttatactatatctcttctcctggtttagtttggta |
117 |
Q |
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| T |
4672643 |
gttaataggggagttgatcatttgcattggagaattcgtttgtaagtttggttttttgtatttgtttatactatatctcttctcctggtttagtttggta |
4672544 |
T |
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| Q |
118 |
gtttatttacatgattgcttatagaatattgaattttttgttgaacatgactcatatttgctgataagtagcctgctatgaatcacatacatgaacacca |
217 |
Q |
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| T |
4672543 |
gtttatttacatgattgcttatagaatattgaattttttgttgaacatgactcatatttgctgataagtagcctgctatgaatcacatacatgaacacca |
4672444 |
T |
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| Q |
218 |
gacatgacacagacacgtcgatattggtaatagttttgaaaagggacataattgaatgtaatcacatttgtcggtgctacagcggtagccagtcaccaaa |
317 |
Q |
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| T |
4672443 |
gacatgacacagacacgtcgatattggtaatag-tttgaaaagggacataattgaatgtaatcacatttgtcggtgctacagcggtagccagtcaccaaa |
4672345 |
T |
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| Q |
318 |
gtgtcttccctttg |
331 |
Q |
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| T |
4672344 |
gtgtcttccctttg |
4672331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 33770557 - 33770529
Alignment:
| Q |
265 |
ataattgaatgtaatcacatttgtcggtg |
293 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33770557 |
ataattgaatgtaatcacatttgtcggtg |
33770529 |
T |
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