View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19444_high_32 (Length: 329)

Name: NF19444_high_32
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19444_high_32
NF19444_high_32
[»] chr2 (2 HSPs)
chr2 (210-314)||(8416587-8416691)
chr2 (210-300)||(8376422-8376512)
[»] chr4 (2 HSPs)
chr4 (20-172)||(42491917-42492069)
chr4 (89-172)||(52365140-52365223)
[»] chr5 (2 HSPs)
chr5 (20-172)||(9936108-9936259)
chr5 (53-172)||(6696025-6696144)
[»] scaffold1738 (1 HSPs)
scaffold1738 (210-300)||(253-343)
[»] chr1 (1 HSPs)
chr1 (20-172)||(39345227-39345379)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 210 - 314
Target Start/End: Original strand, 8416587 - 8416691
Alignment:
Q  210 gaaattatatttgcaaaatcagatctctgttggctatctttacatttgctttctatgtcaaagtactaacaatgaatatacataaaataatgtgaattag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8416587 gaaattatatttgcaaaatcagatctctgttggctatctttacatttgctttctatgtcaaagtactaacaatgaatatacataaaataatgtgaattag 8416686  T
Q  310 gatct 314  Q
    |||||    
T  8416687 gatct 8416691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 8376512 - 8376422
Alignment:
Q  210 gaaattatatttgcaaaatcagatctctgttggctatctttacatttgctttctatgtcaaagtactaacaatgaatatacataaaataat 300  Q
    |||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  8376512 gaaattatatatgcaaaatcagatctatgttgtctatatttacatttgctttctatgtcaaaggactaacaatgtttatacataaaataat 8376422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 42492069 - 42491917
Alignment:
Q  20 aggagaacgtgggtaaacatgggtgnnnnnnngttcctgagaattatttattcctgagcttannnnnnngttcctatctaccaaacaaaggcatgtttag 119  Q
    |||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  42492069 aggagaacgtgggtaaacatgggtgtttttttgttcctgggaattatttattcctgagcttatttttttgttcctatctaccaaacaaaggcatgtttag 42491970  T
Q  120 ttccaacgtaagaatcctgggaatannnnnnncagaagggaaacaaacgcccc 172  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  42491969 ttccaacgtaagaatcctgggaatatttttttcagaagggaaacaaacgcccc 42491917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 52365140 - 52365223
Alignment:
Q  89 gttcctatctaccaaacaaaggcatgtttagttccaacgtaagaatcctgggaatannnnnnncagaagggaaacaaacgcccc 172  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||       |||||||||||||||||||||    
T  52365140 gttcctatctaccaaacaaaggcatgtttaattccaaggtaagaatcctgggaatatttttttcagaagggaaacaaacgcccc 52365223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 9936108 - 9936259
Alignment:
Q  20 aggagaacgtgggtaaacatgggtgnnnnnnngttcctgagaattatttattcctgagcttannnnnnngttcctatctaccaaacaaaggcatgtttag 119  Q
    |||||||||||||||||||||||||        |||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  9936108 aggagaacgtgggtaaacatgggtgttttttt-ttcctgggaattatttattcctgagcttatttttttgttcctatctaccaaacaaaggcatgtttag 9936206  T
Q  120 ttccaacgtaagaatcctgggaatannnnnnncagaagggaaacaaacgcccc 172  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  9936207 ttccaacgtaagaatcctgggaatatttttttcagaagggaaacaaacgcccc 9936259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 6696144 - 6696025
Alignment:
Q  53 ttcctgagaattatttattcctgagcttannnnnnngttcctatctaccaaacaaaggcatgtttagttccaacgtaagaatcctgggaatannnnnnnc 152  Q
    ||||||| ||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  6696144 ttcctgaaaattatttattcctgggcttatttttttgttcctatctaccaaacaaaggcatgtttagttccaacgtaagaatcctgggaatatttttttc 6696045  T
Q  153 agaagggaaacaaacgcccc 172  Q
    ||||||||||||||||||||    
T  6696044 agaagggaaacaaacgcccc 6696025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 343 - 253
Alignment:
Q  210 gaaattatatttgcaaaatcagatctctgttggctatctttacatttgctttctatgtcaaagtactaacaatgaatatacataaaataat 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  343 gaaattatatttgcaaaatcagatctctgttggctatatttacatttgctttctatgtcaaaggactaacaatgtttatacataaaataat 253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 39345379 - 39345227
Alignment:
Q  20 aggagaacgtgggtaaacatgggtgnnnnnnngttcctgagaattatttattcctgagcttannnnnnngttcctatctaccaaacaaaggcatgtttag 119  Q
    ||||||||||||||||||||||| |       ||||||  |||||||||||||||| |||||       |||| |||||||||||||||| |||||||||    
T  39345379 aggagaacgtgggtaaacatgggcgtttttttgttcctaggaattatttattcctgggcttatttttttgttcttatctaccaaacaaagacatgtttag 39345280  T
Q  120 ttccaacgtaagaatcctgggaatannnnnnncagaagggaaacaaacgcccc 172  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||    
T  39345279 ttccaacgtaagaatcctgggaatatttttttcagaagggaaacaaacgcccc 39345227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University