View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_high_33 (Length: 317)
Name: NF19444_high_33
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 6578850 - 6579145
Alignment:
| Q |
1 |
gagtcaaaagtaatgagttacatattttccataaacaaaatataatctaacgactagttttccataaaatactggttacctattttcatctacccagtta |
100 |
Q |
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| T |
6578850 |
gagtcaaaagtaatgagttacatattttccataaacaaaatagaatctaacgactagttttccataaaatactggttacctattttcatctacccagtta |
6578949 |
T |
|
| Q |
101 |
cagatttcaactcaccctttcaaatgatgttcttgcaattgagcttgaagctgatgatctgctaggacaccagatgaacccaagactgacaatttttctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6578950 |
cagatttcaactcaccctttcaaatgatgttcttgcaattgagcttgaagctgatgatctgctaggacaccagatgaacccaagactgataatttttctt |
6579049 |
T |
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| Q |
201 |
ttaaaagcgatgctgcaaagaatctcaaccattagtatgtatatgattaaagagttggatggaaacaacatatctaacacaaacatgagatgaatg |
296 |
Q |
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| T |
6579050 |
ttaaaagcgatgctgcaaagaatctcaaccattagtatgtatatgattaaagagttggatggaaacaacatatctaacacaaacatgagatgaatg |
6579145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 34241367 - 34241249
Alignment:
| Q |
99 |
tacagatttcaactcaccctttcaaatgatgttcttgcaattgagcttgaagctgatgatctgctaggacaccagatgaacccaagactgacaatttttc |
198 |
Q |
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|||||||| |||||||||||| | |||||| ||||| | |||||||||||||||||| ||||||| || |||||||| |||||| |||| | |||||| |
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| T |
34241367 |
tacagattctaactcacccttttagatgatgctcttggagttgagcttgaagctgatggtctgctaacaccccagatgatcccaaggctgaaagtttttc |
34241268 |
T |
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| Q |
199 |
ttttaaaagcgatgctgca |
217 |
Q |
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|||| || ||||||||| |
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| T |
34241267 |
ctttataacagatgctgca |
34241249 |
T |
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