View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_high_34 (Length: 316)
Name: NF19444_high_34
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_34 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 24482420 - 24482757
Alignment:
| Q |
1 |
tactgctttcaaggagcaccaaaacctccttgttgatcgatgatgatggttgttgcttcacttttttcactgtgagatactcatgacaagaatca----- |
95 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24482420 |
tactgctttcaaggagcaccaaatcctccttgttgaccgatgatgatggttgttgcttcacttttttcactgtgagatactcatcacaagaatcatcaca |
24482519 |
T |
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| Q |
96 |
--------------atccaattgaagaatgtcattaccctataa---taataacaagattgatcaaaatcacaattttattaaaacaaacaaaacttagg |
178 |
Q |
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| T |
24482520 |
atattggacagccaatccaattgaagaatgtcattaccctataataataataacaagattgatcaaaatcacaattttattgaaacaaacaaaacttagg |
24482619 |
T |
|
| Q |
179 |
ttctgatcttcacagtaacatctcaaagaaaaagtagtctaagaagtaatgttgctctgatacaacagctagcacgagtccaaacatagacaacaagaca |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
24482620 |
ttctgatcttcacagtaacatctcaaagaaaaagtagtctaaaaactaatgttgctatgatacaacagttagcacgagtccaaacatagacaagaagaca |
24482719 |
T |
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| Q |
279 |
aaaattgcataacacaacaacaatattacctcttcatc |
316 |
Q |
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| T |
24482720 |
aaaattgcataacacagcaacaatattacctcttcatc |
24482757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 14150505 - 14150239
Alignment:
| Q |
1 |
tactgctttcaaggagcaccaaaacctccttgttgatcgatgatgatggttgttgcttcacttttttcactgtgagatactcatgacaagaatca----- |
95 |
Q |
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| T |
14150505 |
tactgctttcaaggagcacaaaatcctccttgttgaccgatgatgatggttgttgctccacttttttcactgtgagattctcatcacaagaatcatccac |
14150406 |
T |
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| Q |
96 |
---------------atccaattgaagaatgtcattaccctataataataacaagattgatcaaaatcacaattttattaaaacaaacaaaacttaggtt |
180 |
Q |
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| T |
14150405 |
aatattggacaaccaatccaattgaagaatgtcattgccgtgtaataataacaagattgatcaaaatcacacttttattataacaaac--aacttaggtt |
14150308 |
T |
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| Q |
181 |
ctgatcttcacagtaacatctcaaagaaaaagtagtctaagaagtaatgttgctctgatacaacagcta |
249 |
Q |
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| T |
14150307 |
ctgatcctcatactaacaccttaaagcaaaagtagtctaaaaaccaatgtttctctgatacaacagcta |
14150239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14151169 - 14151402
Alignment:
| Q |
1 |
tactgctttcaaggagcaccaaaacctccttgttgatcgatgatgatggttgttgcttcacttttttcactgtgagatactcatgacaagaatcaatc-- |
98 |
Q |
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| T |
14151169 |
tactgctttcatggagcacaaaatcctccttgtagactgatgatgatggttgttgctccacttttttcacagtgagattctcatctcaagaatcatccac |
14151268 |
T |
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| Q |
99 |
-----------------caattgaagaatgtcattaccctataataataacaagattgatcaaaatcacaattttattaaaacaaacaaaacttaggttc |
181 |
Q |
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||||| |||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
14151269 |
aatattggacaacaaaacaattaaagaatgtcattgccctgtagtaataacaagattgatcaaaatcacacttttattaaaatagacaaaacttaggttc |
14151368 |
T |
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| Q |
182 |
tgatcttcacagtaacatctcaaagaaaaagtag |
215 |
Q |
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| T |
14151369 |
tgatctttatagtaacacctcaaagcaaaagtag |
14151402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 42713968 - 42713933
Alignment:
| Q |
128 |
ataacaagattgatcaaaatcacaattttattaaaa |
163 |
Q |
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| T |
42713968 |
ataacaagattgatcaaaatcacaattttattaaaa |
42713933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 52421929 - 52421838
Alignment:
| Q |
4 |
tgctttcaaggagcaccaaaacctccttgttgatcgatgatgatggttgttgcttcacttttttcactgtgagatactcatgacaagaatca |
95 |
Q |
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|||||| | ||||||| ||| |||||||||||| ||||||||||| ||||||| ||||||||||| ||| | || ||||| || ||||||| |
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| T |
52421929 |
tgcttttagggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttcattgtaatattctcatcacgagaatca |
52421838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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