View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19444_high_41 (Length: 265)
Name: NF19444_high_41
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_41 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 771042 - 771300
Alignment:
| Q |
13 |
aatataactttggagtcaaattttaatatcaaattaataaattaacacaagatgtcaaactcatgctaacaaaaagttcctaactagaatgtatgttccc |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
771042 |
aatataaccatggagtcaaattttaatatcaaattaataaattaacacaagaggtcaaattcatgctaacaaaaagtttctaactggaaagtatgttccc |
771141 |
T |
|
| Q |
113 |
atatcaactagaatgttctatacatcaacatggttatccaaattta------tatagcaatgcatatcaatataactatgtaaatatattttattacttc |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
771142 |
atatcaacaagaatgttctatacatcaacatggttatccaaatttatacaagtatagcaacgcatatcaatataactatgtaaatatattttattacttc |
771241 |
T |
|
| Q |
207 |
aattactcttaaattaaatacacactgatgtgggtaaataatctcttcttgaaaagaag |
265 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
771242 |
aataactcttaaattaaatacatactgatgtgggaaaataatctcttcttgaaaagaag |
771300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 9971561 - 9971508
Alignment:
| Q |
104 |
tatgttcccatatcaactagaatgttctatacatcaacatggttatccaaattt |
157 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
9971561 |
tatgttcccatctcaacaagaatgttcttcacatcaacatggttatccaaattt |
9971508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University