View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_high_48 (Length: 241)
Name: NF19444_high_48
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_high_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 41612330 - 41612105
Alignment:
| Q |
17 |
acctaaagacataagatacttcaagagcatagcatttccagcataaacaaattgtacaccgatcaaccctccaattacaaccacatcttccatcattctt |
116 |
Q |
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| T |
41612330 |
acctaaagacataagatacttcaagagcatagcatttccagcataaacaaattgtacaccaatcaacccgccaattacaaccacatcttccatcattctt |
41612231 |
T |
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| Q |
117 |
gaattcatcatccccaccattttcacc-nnnnnnnnnnnnncttcttccaaaataaattaacaaaagaggatggatatcttttttaaacctatcctctct |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41612230 |
gaattcatcatccccaccattttcaccttttttttttttttcttcttccaaaataaattaacaaaagaggatggatatcttttttaaacctatcctctct |
41612131 |
T |
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| Q |
216 |
tcattctcttatgcttcctttatacc |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41612130 |
tcattctcttatgcttcctttatacc |
41612105 |
T |
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