View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19444_low_1 (Length: 950)

Name: NF19444_low_1
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19444_low_1
NF19444_low_1
[»] chr4 (9 HSPs)
chr4 (638-925)||(47293367-47293642)
chr4 (361-640)||(47293673-47293972)
chr4 (35-238)||(47294095-47294298)
chr4 (668-887)||(56208520-56208739)
chr4 (660-847)||(55705858-55706045)
chr4 (680-824)||(45876737-45876881)
chr4 (691-824)||(45858817-45858950)
chr4 (671-842)||(54304200-54304377)
chr4 (107-182)||(56043786-56043861)
[»] chr8 (2 HSPs)
chr8 (661-874)||(7972058-7972271)
chr8 (667-871)||(7961694-7961898)
[»] chr5 (3 HSPs)
chr5 (680-824)||(35854542-35854686)
chr5 (660-822)||(10521303-10521465)
chr5 (748-824)||(35802504-35802580)
[»] chr2 (1 HSPs)
chr2 (691-822)||(24357457-24357588)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 638 - 925
Target Start/End: Complemental strand, 47293642 - 47293367
Alignment:
Q  638 tcaggaagattcggactagggattgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgata 737  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293642 tcaggaagattcggactagggattgagcgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgata 47293543  T
Q  738 gtccaccaatagcatcaaccaaaccatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatct 837  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293542 gtccaccaatagcatcaaccaaaccatgagatactgcgtccttactggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatct 47293443  T
Q  838 ggaaagagcctcattatctcgaaatcgtatatacatatgacgtgctctctcggcaaatgcctctgtatcagcggtgtggtacttgtaa 925  Q
    |||||||||| |||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293442 ggaaagagccgcat------------atatatacatatgacgtgctctctcggcaaatgcctctgtatcagcggtgtggtacttgtaa 47293367  T

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Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 361 - 640
Target Start/End: Complemental strand, 47293972 - 47293673
Alignment:
Q  361 gagaaaacagatgcaaaagtaagaaccaatgtgcttaagatggtgaataatgcagggagaaaacttaggaaaattgtttataataagctatcataatagc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293972 gagaaaacagatgcaaaagtaagaaccaatgtgcttaagatggtgaatagtgcagggagaaaacttaggaaaattgtttataataagctatcataatagc 47293873  T
Q  461 aa-aaaataaaacaaannnnnnnnnattcaaagttgaatttctacctcctaagctacttgacaaaaataaaataaaatctcacatggttccatccatccg 559  Q
    || ||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47293872 aaaaaaataaaacaattttttttttattcaaagttgaatttctacctcctaagctacttgacaaaaataaaataaaatctcgcatggttccatccatccg 47293773  T
Q  560 caatggaac-------------------tccctccatccaactagagaatagccaatagccaatggagctccattacaatgggcccagaccctcccatca 640  Q
    |||||||||                   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293772 caatggaactccattagaatgggcaaagtccctccatccaacgagagaatagccaatagccaatggagctccattacaatgggcccagaccctcccatca 47293673  T

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Target: chr4; HSP #3
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 47294298 - 47294095
Alignment:
Q  35 agcaaagggatattcaagtnnnnnnntggaacaaattccatcatttaataattattagtgtatatataaatatttggattatacacccaaagaaaaacaa 134  Q
    |||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47294298 agcaaagggatattcaagtaaaaaaatggaacaaattccatcatttaataatgattagtgtatatataaatatttggattatacacccaaagaaaaacaa 47294199  T
Q  135 ttgcctgcaattataaactaattacaagctctgcatctttagtttaatgaaaaggacgaaagagaaatatttccttgtctaaaagtctttgtctaaatac 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47294198 ttgcctgcaattataaactaattacaagctctgcatctttagtttaatgaaaaggacgaaagagaaatatttccttgtctaaaagtctttgtctaaatac 47294099  T
Q  235 aaat 238  Q
    ||||    
T  47294098 aaat 47294095  T

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Target: chr4; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 668 - 887
Target Start/End: Original strand, 56208520 - 56208739
Alignment:
Q  668 tccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgag 767  Q
    ||||||| ||| || ||| ||| ||||||||||   |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |||    
T  56208520 tccacaacagtaacatgtttgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagag 56208619  T
Q  768 atactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgtat 867  Q
    ||| ||| || ||||||||| ||| ||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||||| || |    
T  56208620 atagtgcatctttaccggtctaaaccctcccctgtgcaacctcttccatctcatctatagtcattgatctggaaagagccgcattatctcgaaattgttt 56208719  T
Q  868 atacatatgacgtgctctct 887  Q
    ||| |||||  |||||||||    
T  56208720 ataaatatgttgtgctctct 56208739  T

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Target: chr4; HSP #5
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 660 - 847
Target Start/End: Complemental strand, 55706045 - 55705858
Alignment:
Q  660 ttgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaa 759  Q
    ||||| ||||||||| | | |||| |||||||||||||||||| || ||||||||||  ||||||||||| |||||||  ||||||||||||||||||||    
T  55706045 ttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaa 55705946  T
Q  760 accatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcc 847  Q
    |||||||||| ||||||| ||||||||||||| ||| || || ||||||||||||||||||||||| ||||| |||||||||||||||    
T  55705945 accatgagatgctgcgtctttaccggtccaaaccctcccatgcgcaacctcttccatcttgtctatagtcatagatctggaaagagcc 55705858  T

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Target: chr4; HSP #6
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 680 - 824
Target Start/End: Original strand, 45876737 - 45876881
Alignment:
Q  680 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 779  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||| |||| ||||    
T  45876737 acctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatcct 45876836  T
Q  780 taccggtccaaatccttccctgtgcaacctcttccatcttgtcta 824  Q
    |||||||||||| ||| || |||||||||||||||||||||||||    
T  45876837 taccggtccaaaccctcccttgtgcaacctcttccatcttgtcta 45876881  T

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Target: chr4; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 691 - 824
Target Start/End: Original strand, 45858817 - 45858950
Alignment:
Q  691 ttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttaccggtccaa 790  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  791 atccttccctgtgcaacctcttccatcttgtcta 824  Q
    | |||  |||||||| ||||||||||||||||||    
T  45858917 accctctcctgtgcagcctcttccatcttgtcta 45858950  T

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Target: chr4; HSP #8
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 671 - 842
Target Start/End: Complemental strand, 54304377 - 54304200
Alignment:
Q  671 acaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagata 770  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||| || || |  || ||||||||||||||||||||  |||||     
T  54304377 acaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatg 54304278  T
Q  771 ctgcgtccttaccggtccaaa------tccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaa 842  Q
     |||||||||||| |||||||       ||| ||||||| |||||||||||| |||||||| ||||||||| ||||||    
T  54304277 ttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 54304200  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 56043861 - 56043786
Alignment:
Q  107 tttggattatacacccaaagaaaaacaattgcctgcaattataaactaattacaagctctgcatctttagtttaat 182  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||||||||| |   |||||||||| ||||||||    
T  56043861 tttgggttatacacccaaacataaacaattgcctgcaattataaactaattatacattctgcatcttcagtttaat 56043786  T

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Target: chr8 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 661 - 874
Target Start/End: Original strand, 7972058 - 7972271
Alignment:
Q  661 tgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaa 760  Q
    |||| ||||||||| ||| || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||    
T  7972058 tgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaa 7972157  T
Q  761 ccatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaa 860  Q
    |||| ||||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||    
T  7972158 ccattagatactgcatctttaccggtccaaatcctcctctgtgcaacctcttccatcttgtctacagtcattgatctggaaagatccacatcatctcgaa 7972257  T
Q  861 atcgtatatacata 874  Q
    || || ||||||||    
T  7972258 attgtttatacata 7972271  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 667 - 871
Target Start/End: Original strand, 7961694 - 7961898
Alignment:
Q  667 ctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatga 766  Q
    |||||||| ||| || ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||| |    
T  7961694 ctccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcatta 7961793  T
Q  767 gatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgta 866  Q
    |||| ||| || ||||| |||||||| || || |||||||||||||||||||||||||| |||||| |||| ||||||||| ||| |||||||||| ||     
T  7961794 gatattgcatctttaccagtccaaattctcccttgtgcaacctcttccatcttgtctatagtcattaatcttgaaagagccgcatcatctcgaaattgtt 7961893  T
Q  867 tatac 871  Q
    |||||    
T  7961894 tatac 7961898  T

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Target: chr5 (Bit Score: 113; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 680 - 824
Target Start/End: Complemental strand, 35854686 - 35854542
Alignment:
Q  680 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 779  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||||||    
T  35854686 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcct 35854587  T
Q  780 taccggtccaaatccttccctgtgcaacctcttccatcttgtcta 824  Q
    |||||||||||||||| || |||||||||| || |||||||||||    
T  35854586 taccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 660 - 822
Target Start/End: Complemental strand, 10521465 - 10521303
Alignment:
Q  660 ttgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaa 759  Q
    ||||| |||| |||||| | |||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||  ||||||||||||||||||||    
T  10521465 ttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaa 10521366  T
Q  760 accatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtc 822  Q
    ||| |||||| |||||||||| ||| |||||||||| |  |||| || ||||| |||||||||    
T  10521365 accttgagatgctgcgtccttcccgatccaaatcctcctatgtggaatctctttcatcttgtc 10521303  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 748 - 824
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  748 agcatcaaccaaaccatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtcta 824  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| || |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

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Target: chr2 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 691 - 822
Target Start/End: Complemental strand, 24357588 - 24357457
Alignment:
Q  691 ttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttaccggtccaa 790  Q
    |||||||||||||||||||||||||||||| |||||||| || || || |||||||||||||||||||||||||| ||| |||| || ||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  791 atccttccctgtgcaacctcttccatcttgtc 822  Q
    |  || |||||||| ||||  |||||||||||    
T  24357488 actctcccctgtgctaccttctccatcttgtc 24357457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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