View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19444_low_12 (Length: 510)
Name: NF19444_low_12
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 495
Target Start/End: Complemental strand, 33411091 - 33410632
Alignment:
| Q |
14 |
atatatagcctaagttgatatgcacaattcatcaaatcaaatcaaaacaataacatttgctaacttgctattcctttgattgagattttattctaggaaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33411091 |
atatatagcctaagttgatatgcacaattcatcaaatcaaatcaaaacaattacatttgctaacttgctattcctttgattgagattttattctaggaaa |
33410992 |
T |
|
| Q |
114 |
taaaattttgacactcannnnnnnaaagttaatttctacacttagagataaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagtt |
213 |
Q |
| |
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||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410991 |
taaaattttgacactcatttttttaaagttaattt----------agagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagtt |
33410902 |
T |
|
| Q |
214 |
ttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattaca |
313 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33410901 |
ttgatcctttctatttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggaccgttgattttgattaca |
33410802 |
T |
|
| Q |
314 |
ctcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggcttcatatttaattgttta |
413 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
33410801 |
ctcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggtttcatattcaattgttta |
33410702 |
T |
|
| Q |
414 |
actaattagtgtatctcataattataattagggttataattaacttttgtttagatgaacttgtattaatctaatatgaact |
495 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33410701 |
actaattagtgtatctcataattata------------attaacttttgtttagatgaacatgtattaatctaatatgaact |
33410632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 33425016 - 33424633
Alignment:
| Q |
14 |
atatatagcctaagttgatatgcacaattcatcaaatcaaatcaaaacaataacatttgctaacttgctattcctttgattgagattttattctaggaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33425016 |
atatatagcctaagttgatatgcacaattcatcaaatcaaatcaaaacaattacatttgctaacttgctattcctttgattgagattttattctaggaaa |
33424917 |
T |
|
| Q |
114 |
taaaattttgacactcannnnnnnaaagttaatttctacacttagagataaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagtt |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33424916 |
taaaattttgacactcatttttttaaagttaatttctacatttagagagaaatattttccaaaatcaaattttgatcaaatggcttcttctcgtgtagtt |
33424817 |
T |
|
| Q |
214 |
ttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattaca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33424816 |
ttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggaccgttgattttgattaca |
33424717 |
T |
|
| Q |
314 |
ctcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggcttca |
399 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||||||||| | ||||||| |||| |
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|
| T |
33424716 |
ctcaatgggctcaagacaaagttttccgtgttggagacaacttaggtatgta--aaagggaaaaaacaaattttcatttggtttca |
33424633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 67 - 399
Target Start/End: Complemental strand, 33416900 - 33416563
Alignment:
| Q |
67 |
catttgctaacttgctattcctttgattgagattttat--tctagg----aaataaaattttgacactcannnnnnnaaagttaatttctacacttagag |
160 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||| |||||| ||| ||||| |||||||||| || ||||||||||||| |||||| |
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|
| T |
33416900 |
catttgctagctagctattcttttgattgagattttatattctagggagaaaaaaaaatcttgacactcatttttttaa-gttaatttctacaattagag |
33416802 |
T |
|
| Q |
161 |
ataaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaat--- |
257 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33416801 |
agaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgc |
33416702 |
T |
|
| Q |
258 |
tgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatcta |
357 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
33416701 |
tgcaactgattatattgttggtgatgacaagggttggaccgttgattttgattacactcaatgggctcaagacaaagtttttcgtgttggagacaaccta |
33416602 |
T |
|
| Q |
358 |
ggtatgtaataaaaggaaaaaacaaatatccatttggcttca |
399 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||||| |||| |
|
|
| T |
33416601 |
ggtatg---taaaaggaaaaaataaatgtccatttggtttca |
33416563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 226 - 363
Target Start/End: Complemental strand, 33436903 - 33436766
Alignment:
| Q |
226 |
atttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctc |
325 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||| |
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| T |
33436903 |
atttcaatggttttgctttcttcagttgcaatggcagccgatcacattgttggtgatgacaagggttggactgttgattttaactatactcagtggactc |
33436804 |
T |
|
| Q |
326 |
aagacaaagtttttcgtgttggagacaatctaggtatg |
363 |
Q |
| |
|
| ||||| ||||| |||||||| ||||| || |||||| |
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|
| T |
33436803 |
aggacaaggttttccgtgttggtgacaaccttggtatg |
33436766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 33427829 - 33427931
Alignment:
| Q |
264 |
tgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatg |
363 |
Q |
| |
|
|||||| ||||| ||||||||||| || |||||| || | || |||||||||| ||||| |||||||||||||||||||||| |||||||| |||||| |
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|
| T |
33427829 |
tgatcatattgtgggtgatgacaatggctggactattaacttcaattacactcaatgggcgtaagacaaagtttttcgtgttggtgacaatcttggtatg |
33427928 |
T |
|
| Q |
364 |
taa |
366 |
Q |
| |
|
||| |
|
|
| T |
33427929 |
taa |
33427931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 495
Target Start/End: Complemental strand, 33424582 - 33424534
Alignment:
| Q |
447 |
ttataattaacttttgtttagatgaacttgtattaatctaatatgaact |
495 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33424582 |
ttataattaacttttgtttagatgaacatgtattaatctaatatgaact |
33424534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 443
Target Start/End: Complemental strand, 33416542 - 33416504
Alignment:
| Q |
405 |
aattgtttaactaattagtgtatctcataattataatta |
443 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
33416542 |
aattgcttaactaattagtgtatctcatagttataatta |
33416504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 33427546 - 33427669
Alignment:
| Q |
142 |
ttaatttctacacttag-agataaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggtttta |
240 |
Q |
| |
|
|||||||| | |||||| ||| |||||| || ||||| ||||||||||||||||| |||||||||| | |||||||| | ||||| ||||||||| |
|
|
| T |
33427546 |
ttaatttccatacttaggagagaaatatatttcaaacctaaattttgatcaaatggg--cttctcgtgtgttcttgatcctagctatttcaatggtttta |
33427643 |
T |
|
| Q |
241 |
ctttcatcagttgcaattgcaactga |
266 |
Q |
| |
|
|||| ||||||||||| || ||||| |
|
|
| T |
33427644 |
ttttcctcagttgcaatggctactga |
33427669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 24984670 - 24984844
Alignment:
| Q |
176 |
actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt |
275 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| | | | |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| |||| |
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|
| T |
24984670 |
actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt |
24984766 |
T |
|
| Q |
276 |
tggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaa |
353 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | |||||||| ||||| ||||||||||||||||||||||| ||||| |
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|
| T |
24984767 |
gggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaa |
24984844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 24990500 - 24990674
Alignment:
| Q |
176 |
actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt |
275 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| | | | |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| |||| |
|
|
| T |
24990500 |
actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt |
24990596 |
T |
|
| Q |
276 |
tggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaa |
353 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | |||||||| ||||| ||||||||||||||||||||||| ||||| |
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|
| T |
24990597 |
gggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaa |
24990674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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