View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_14 (Length: 500)
Name: NF19444_low_14
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 496
Target Start/End: Complemental strand, 12945374 - 12944898
Alignment:
| Q |
20 |
aacatagcctatttcgcaggtctacgtgctcttgacgttgatctctctcccattaaaatccgagggatcataatgaaatatccattttttagtggggtcc |
119 |
Q |
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| T |
12945374 |
aacatagcctatttcgcaggtctacgtgctctcgaccttgatctctctcacattaaaatccgagggatcataatgaaatatccattttttagtggggtcc |
12945275 |
T |
|
| Q |
120 |
aaagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagcaggtgatctcatgtggtccctgtgtttgcctgagggcaaagacag |
219 |
Q |
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| T |
12945274 |
agagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagcaggtgacctcatgtggttcctatgtttgcccgagggcaaagacag |
12945175 |
T |
|
| Q |
220 |
ggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagataggacggttgccaaggtgttttgtaaatggctacggtggtgatcca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
12945174 |
ggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagattggacggttgccaaggtgctttgttaatggctacggtggagatcca |
12945075 |
T |
|
| Q |
320 |
ttggtggataagcaaaaggagctggcgaagatttttgcagcacgcggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatct |
419 |
Q |
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| T |
12945074 |
ttggtggataagcagaaggagctggcgaagattttggcggcacgtggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatct |
12944975 |
T |
|
| Q |
420 |
ttgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttatactctctgctgtctctgctcctcctcaa |
496 |
Q |
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| T |
12944974 |
ttgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttatactctctgctgtttctgttgctcctcaa |
12944898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 20 - 468
Target Start/End: Complemental strand, 12937702 - 12937254
Alignment:
| Q |
20 |
aacatagcctatttcgcaggtctacgtgctcttgacgttgatctctctcccattaaaatccgagggatcataatgaaatatccattttttagtggggtcc |
119 |
Q |
| |
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|||||||| || |||||||||||||||||||||||| | ||||||||||| |||| |||| |||| | |||||||| ||| |||||| ||||||| | |
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| T |
12937702 |
aacatagcgtacttcgcaggtctacgtgctcttgacctcgatctctctcctcttaagatccaagggcttataatgaatgctccgttttttggtggggttc |
12937603 |
T |
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| Q |
120 |
aaagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagcaggtgatctcatgtggtccctgtgtttgcctgagggcaaagacag |
219 |
Q |
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| ||||| |||||||||||||||| | |||||| |||| |||| ||| ||||| |||||||||||||| |||| | |||||||||||| | ||| | |
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| T |
12937602 |
agagaacaaaatctgagcttcgtttcattaacgataatatactacccttatcagcaagtgatctcatgtgggccctatctttgcctgagggtacagatcg |
12937503 |
T |
|
| Q |
220 |
ggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagataggacggttgccaaggtgttttgtaaatggctacggtggtgatcca |
319 |
Q |
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||| |||| |||||| ||||||| | || |||| || | ||||| ||||| |||||| |||| ||||| ||||| || ||||||||||| ||||| |
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| T |
12937502 |
ggatcacgtgtattgtaatccaaaagtttcggatgtgatacatggtgagaagatcggacggctgccgaggtgctttgttaacggctacggtggggatccc |
12937403 |
T |
|
| Q |
320 |
ttggtggataagcaaaaggagctggcgaagatttttgcagcacgcggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatct |
419 |
Q |
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|||||||||| |||||||||||| | ||||||||| | ||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||| ||| |
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| T |
12937402 |
ttggtggataggcaaaaggagctagtgaagattttggaggcacgtggggtgcacgtggagtctgttttttgtgaggatgggtttcatgctgtggaactct |
12937303 |
T |
|
| Q |
420 |
ttgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttat |
468 |
Q |
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|||||| | |||||||||||| || ||||| | |||||||||||||| |
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| T |
12937302 |
ttgatcctgctaaggcacaagcattacttgattacgttaagaaatttat |
12937254 |
T |
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