View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_15 (Length: 495)
Name: NF19444_low_15
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 13651517 - 13651936
Alignment:
| Q |
19 |
acataacattcctaaacactgagtacatccacaacagactcattaatttgaat---gatgatgttaaatcaatttcacaatgttaccctaagcttcaatt |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13651517 |
acataacattcctaaacactgaatacatccacaacagactcattagtttgaatattgatgatgttaaatcaatttcacaatgttaccctaagcttcaatt |
13651616 |
T |
|
| Q |
116 |
caagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagccttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13651617 |
caagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagccttct |
13651716 |
T |
|
| Q |
216 |
ttgagagacattgttgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgctactgatttggccgctgaatttgggatacagt |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13651717 |
ttgagagacattattgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgctactgatttggctgctgaatttgggatacagt |
13651816 |
T |
|
| Q |
316 |
tgatacattttcgtactgttgctgctagtaccgtctggatttatttctgtatgcccaaactcttggaatgcaacgagattcccattagaggtatactacc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13651817 |
tgatacattttcgtactgttgctgctagtaccgtctggatttatttctgtatgcccaaactcttggactgcaacgagattcccattagaggtatactacc |
13651916 |
T |
|
| Q |
416 |
cactctgaaactgctcttag |
435 |
Q |
| |
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|||||||||||||||||||| |
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| T |
13651917 |
cactctgaaactgctcttag |
13651936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 94 - 332
Target Start/End: Original strand, 13656840 - 13657078
Alignment:
| Q |
94 |
aatgttaccctaagcttcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccat |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||||||||||||||| | | |||||||||| || | |
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| T |
13656840 |
aatgttaccctaagcttcaattcaagaccatctctgattttcacagtgaggagaaacatcctggatttggagaaaaggtaggtgatgtaattttgtcact |
13656939 |
T |
|
| Q |
194 |
aaatatgtatggtaagccttctttgagagacattgttgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgctactgatttg |
293 |
Q |
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| | ||||||||||||||| |||| ||| || ||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
13656940 |
gagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttg |
13657039 |
T |
|
| Q |
294 |
gccgctgaatttgggatacagttgatacattttcgtact |
332 |
Q |
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|| ||||| ||||||||||| ||||| |||||||||||| |
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| T |
13657040 |
gctgctgagtttgggatacaattgattcattttcgtact |
13657078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 94 - 332
Target Start/End: Original strand, 13646514 - 13646752
Alignment:
| Q |
94 |
aatgttaccctaagcttcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccat |
193 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| | | | ||||||||||||||||||||||||| || | ||||||||| | || | |
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|
| T |
13646514 |
aatgttaccctaagcttcaattcaagactatctctgattttcatagtgaagagaagcatcctggatttggagaaaggataggtgatgtaattacgtcact |
13646613 |
T |
|
| Q |
194 |
aaatatgtatggtaagccttctttgagagacattgttgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgctactgatttg |
293 |
Q |
| |
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| | ||||||||||||||| |||| ||| || ||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
13646614 |
gagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttg |
13646713 |
T |
|
| Q |
294 |
gccgctgaatttgggatacagttgatacattttcgtact |
332 |
Q |
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|| ||||| ||||| ||||| ||||| |||||||||||| |
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| T |
13646714 |
gctgctgagtttggaatacaattgattcattttcgtact |
13646752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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