View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_17 (Length: 460)
Name: NF19444_low_17
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Complemental strand, 41365415 - 41364983
Alignment:
| Q |
13 |
aatattgcacgacaacaacaatgatgggttcaagactcccacatcttcagatcacaaaatcccaccgattcttgaatgtcctggtgcaccctgcaagaag |
112 |
Q |
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| T |
41365415 |
aatattgcaagacaacaacaatgatgggttcaagactcccacatcttcagatcacaaaatcccaccgatttttgaatgtcctggtgcaccctgcaagaag |
41365316 |
T |
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| Q |
113 |
aaaaccataataacaaagacacccatgaaacgaaagccattgtgtcgcaaaagaatcgtgtttgatgagaagattcttgatgaagaaatcaaagaatccg |
212 |
Q |
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| T |
41365315 |
aaaaccataataacaaagacacccatgaaacgaaagccattgtgtcgcaaaagaatcgtgtttgatgagaagattcttgatgaagaaatcaaagaatccg |
41365216 |
T |
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| Q |
213 |
ggtacaattgatttgatgattagtgctttaacttgatccaggcggatctgaattactcgcattagttttgnnnnnnnnnnnnnnnnnnncgagattgtga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
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| T |
41365215 |
ggtacaattgatttgatgattagtgctttaacttgatccaggcggatctgaattgcccgcattagttttg-aaaaatgaaaaaagaaaacgagattgtga |
41365117 |
T |
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| Q |
313 |
gttgcatgaagaacgtggagtgacaattgcttttgcgtacctgtgaagcttagggatgattcatcatcaaatgtaattttagagtcatttgagtccattg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41365116 |
gttgcatgaagaacgtggagtgacaattgcttttgcgtacctgtgaagcttagggatgattcatcatcaaatgtaattttagagtcatttgagttcattg |
41365017 |
T |
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| Q |
413 |
tttgatttgtgtctttcatttcaacgttggtttt |
446 |
Q |
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| T |
41365016 |
tttgatttgtgtctttcatttcaacgttggtttt |
41364983 |
T |
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