View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_19 (Length: 433)
Name: NF19444_low_19
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 416
Target Start/End: Complemental strand, 35477447 - 35477026
Alignment:
| Q |
5 |
tgtcgaagaatatacgtgggctcatatgcaaaattgatagtgaaattattttccttctctcatgtctctcgtgtgtgtctcccatt---ttannnnnnnn |
101 |
Q |
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| T |
35477447 |
tgtctaagactatacgagggctcataggcaaaattgatagtgaatttattttccttctctcatgtctctcgtgtgtgtctctcattcttttttttttttt |
35477348 |
T |
|
| Q |
102 |
gaaacaactcccatctcgattttaaatttggagtgtgnnnnnnnncaggatttttacacacttgaattttaaattcaaaatgtaaaaaatatacaatagt |
201 |
Q |
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| T |
35477347 |
taaacaactcccatctcgattttaaatttggagtgtgttttttt-caggatttttacacacttgaattttaaattcaaaatgtaaaaaatgtacaatagt |
35477249 |
T |
|
| Q |
202 |
gaacaaat------gaaa----tggtttaaaactcgtgttctccaatactaaacttcaaaggttaacgttttgggttgnnnnnnngtattttctttattc |
291 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35477248 |
gaacaaattgaaaggaaaataatggtttaaaactcgtgttctccaatactaaacttcaaaggttaacgttttgggttgaaaaaaagtattttctttattc |
35477149 |
T |
|
| Q |
292 |
tataagcaaatcgctagattttctcaatagtatcctgaattcttgaaattatgcataatgcttttcccatttagtaaaaccagtttatattcttacagaa |
391 |
Q |
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|| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
35477148 |
ta--agcaaatcgctagattttctagatagtatcctgaattcatgaaattatgcataatgcttttaccatttagtaaaatcagtttatattcttacagaa |
35477051 |
T |
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| Q |
392 |
ggataactatgttcaccttctcgat |
416 |
Q |
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|||||||||||||||| |||||||| |
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| T |
35477050 |
ggataactatgttcacattctcgat |
35477026 |
T |
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