View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19444_low_20 (Length: 426)
Name: NF19444_low_20
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 6 - 410
Target Start/End: Original strand, 13031189 - 13031592
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcggcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgttt |
105 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13031189 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgttt |
13031288 |
T |
|
| Q |
106 |
cttcctttggtaatagaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaagttggtcattttatatcactttcttggagtgt |
205 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
13031289 |
cttcctttggtaataaaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaagttggtcattttagatcactttcaaggagtgt |
13031388 |
T |
|
| Q |
206 |
atcaagaaattggtcagctgcaaaacaactacaagcaatagggaccaatctttgttttcctaagagtaatgaacttgttgctacaaatggtcttgcattg |
305 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13031389 |
atcaagaaattggtcagctg-aaaacaactacaagcaatagggaccaatctttgttttcctaagagtaatgaacttgttgctacaaatggtcttgcattg |
13031487 |
T |
|
| Q |
306 |
gctatttatacaatgagttcaattttattgtttacaatgtggtcacttgtggctgcaattccttgtcaagataggggattacatctaaacttttcggttc |
405 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
13031488 |
gctatttatacaatgagttcaattttgttgtttacaatgtggtcacttgtggctgcaattccttgtcaagataggggattaaatataaatttttcggttc |
13031587 |
T |
|
| Q |
406 |
cacgg |
410 |
Q |
| |
|
||||| |
|
|
| T |
13031588 |
cacgg |
13031592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 6 - 410
Target Start/End: Original strand, 12976434 - 12976838
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcggcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgttt |
105 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976434 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgttt |
12976533 |
T |
|
| Q |
106 |
cttcctttggtaatagaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaagttggtcattttatatcactttcttggagtgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
12976534 |
cttcctttggtaatagaaatagatcatttagtagaaacaatgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgt |
12976633 |
T |
|
| Q |
206 |
atcaagaaattggtcagctgcaaaacaactacaagcaatagggaccaatctttgttttcctaagagtaatgaacttgttgctacaaatggtcttgcattg |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976634 |
atcaaggaattggtcagctgcaaaacaactacaagcactagggaccaatctttgttttcctaagagtaatgaacttgttgctacaaatggtcttgcattg |
12976733 |
T |
|
| Q |
306 |
gctatttatacaatgagttcaattttattgtttacaatgtggtcacttgtggctgcaattccttgtcaagataggggattacatctaaacttttcggttc |
405 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976734 |
actatttatacaatgagttcaattttgttgtttacaatgtggtcacttgtggctgcaattccttgtcaagataggggattacatctaaacttttcggttc |
12976833 |
T |
|
| Q |
406 |
cacgg |
410 |
Q |
| |
|
|||| |
|
|
| T |
12976834 |
tacgg |
12976838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 6 - 410
Target Start/End: Original strand, 13012392 - 13012795
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcggcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgttt |
105 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13012392 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgttt |
13012491 |
T |
|
| Q |
106 |
cttcctttggtaatagaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaagttggtcattttatatcactttcttggagtgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
13012492 |
cttcctttggtaatagaaatagatcatttggtagaaacaatgttaatggagataaagggtcatctcaagttgg-cattttagatcactttcttggagtgt |
13012590 |
T |
|
| Q |
206 |
atcaagaaattggtcagctgcaaaacaactacaagcaatagggaccaatctttgttttcctaagagtaatgaacttgttgctacaaatggtcttgcattg |
305 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13012591 |
atcaaggaattggtcagctgcaaaacaactacaagcaatagggacccatctttgttttcctaagagtaatgaacttgttgctacaaatggtcttgcatcg |
13012690 |
T |
|
| Q |
306 |
gctatttatacaatgagttcaattttattgtttacaatgtggtcacttgtggctgcaattccttgtcaagataggggattacatctaaacttttcggttc |
405 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
13012691 |
actatttatacaatgagttcaattttgttgtttacaatgtggtcacttgtggctgcatttccttgtcaagatagggaattgaatctaaatttttcggttc |
13012790 |
T |
|
| Q |
406 |
cacgg |
410 |
Q |
| |
|
||||| |
|
|
| T |
13012791 |
cacgg |
13012795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 6 - 410
Target Start/End: Original strand, 13008833 - 13009237
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcggcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgttt |
105 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13008833 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgttt |
13008932 |
T |
|
| Q |
106 |
cttcctttggtaatagaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaagttggtcattttatatcactttcttggagtgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
13008933 |
cttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatcacaagttggtcattttagatcactttcttggagtgt |
13009032 |
T |
|
| Q |
206 |
atcaagaaattggtcagctgcaaaacaactacaagcaatagggaccaatctttgttttcctaagagtaatgaacttgttgctacaaatggtcttgcattg |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13009033 |
atcaaggaattggtcagctgcaaaacaactacaagcactagggaccaatctttgttttccaaagagtaatgaacttgttgctacaaatggtcttgcattg |
13009132 |
T |
|
| Q |
306 |
gctatttatacaatgagttcaattttattgtttacaatgtggtcacttgtggctgcaattccttgtcaagataggggattacatctaaacttttcggttc |
405 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
13009133 |
gctatttatacaatgagttcaattttgttgtttacaatgtggtcacttgtggctgcaattccttgtcaagaaaggggcttacatctcaacttttcggttc |
13009232 |
T |
|
| Q |
406 |
cacgg |
410 |
Q |
| |
|
||||| |
|
|
| T |
13009233 |
cacgg |
13009237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 12997594 - 12997657
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcggcgcgctaagaaagctcttgttgatttagaaattggta |
69 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12997594 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggta |
12997657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University