View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_21 (Length: 419)
Name: NF19444_low_21
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_21 |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 11012477 - 11012133
Alignment:
| Q |
1 |
actaatatagcaattatcatagtaacattttccattnnnnnnnnngtgttagggaatgttaaatgtgttttatnnnnnnn-tataacaaaaataattaac |
99 |
Q |
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| T |
11012477 |
actaatatagcaattatcatactaacattttccattaaaaaaaatgtgttagggaatgttaaatgttttttataaaaaaaatataacaaaaataattaac |
11012378 |
T |
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| Q |
100 |
taggaccatggaatcctcttaaaataactagaaccggaaaaatgaccatgaaataatactgataagtagaaaaatttacaaacatcggatgttaaattta |
199 |
Q |
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| T |
11012377 |
taggaccatggaatcctcttaaaataactagaaccggaaaaatgaccatgaaataatactgataagtagaaaaatttacaaacatcggatgttaaatcta |
11012278 |
T |
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| Q |
200 |
acggaaggagttacacttctcaatattgtaaatcaatgtttgaatcttaactcataaaagcattcatatagtgtaggtcatatctcaattaaatttnnnn |
299 |
Q |
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| T |
11012277 |
acggaaggagttacacttctcagtattgtgaatcaatgtttgaatcttaactcataaaagcattcatatagtgtgggtcatatctcaattaaatttaaaa |
11012178 |
T |
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| Q |
300 |
nnnnntgttagtttattacaaaaatatcatttaattattgatatt |
344 |
Q |
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| T |
11012177 |
aaaaatgttagtttattacaaaaatatcatttaattattgatatt |
11012133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 226
Target Start/End: Complemental strand, 11002620 - 11002474
Alignment:
| Q |
84 |
aacaaaaataattaactaggaccatggaatcctcttaaaataa--ctagaaccggaaaaatgaccatgaaataatactgat--aagtagaaaaatttaca |
179 |
Q |
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| T |
11002620 |
aacaaaaataattaacaagaaccatgaaatcctctaaaaaaaaatctaaaacaggaaaaatgaccatgaaataatacttcttaaaatacaaaaatgtaca |
11002521 |
T |
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| Q |
180 |
aacatcggatgttaaatttaacggaaggagttacacttctcaatatt |
226 |
Q |
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| T |
11002520 |
ctcgatggatgttaaatgtagcggaaggagttacactcttcaatatt |
11002474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 11012101 - 11012064
Alignment:
| Q |
379 |
agataaacgaaatcatcaagccattataaactcacaca |
416 |
Q |
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| T |
11012101 |
agataaacgaaatcaccaaaccattataaactcacaca |
11012064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 9234249 - 9234289
Alignment:
| Q |
379 |
agataaacgaaatcatcaagccattataaactcacacacac |
419 |
Q |
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| T |
9234249 |
agatagacgaaatgataaagccattataaactcacacacac |
9234289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 37117847 - 37117887
Alignment:
| Q |
379 |
agataaacgaaatcatcaagccattataaactcacacacac |
419 |
Q |
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| T |
37117847 |
agataaacgaaatgacaaagccattataaactcacacacac |
37117887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 16687552 - 16687592
Alignment:
| Q |
379 |
agataaacgaaatcatcaagccattataaactcacacacac |
419 |
Q |
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| T |
16687552 |
agataaacgaaatgacaaagccattataaactcacacacac |
16687592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 43968049 - 43968009
Alignment:
| Q |
379 |
agataaacgaaatcatcaagccattataaactcacacacac |
419 |
Q |
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| T |
43968049 |
agatagacgaaatgataaagccattataaactcacacacac |
43968009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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