View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_22 (Length: 404)
Name: NF19444_low_22
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 8964021 - 8964406
Alignment:
| Q |
11 |
gatgctgagtacaatatatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtttaaggcattgactaattagatgat |
110 |
Q |
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| T |
8964021 |
gatgctgagtacaatatatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtttaaggtattgactaattagatgat |
8964120 |
T |
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| Q |
111 |
tttttacagtaagcttctatagtgtacttttattttacctaaaattggttttctgtcatcattgttatactataccttcactatgtgatgagtaatgaag |
210 |
Q |
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| T |
8964121 |
tttttacagtaagcttctatagtgtagttttattttacctaaaattggttttctgtcatcattgttatactataccttcactatgtgatgagtaatgaag |
8964220 |
T |
|
| Q |
211 |
aaactaactaagttaatgtgcatattgttttagtatcaatatttaatgggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaataga |
310 |
Q |
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| T |
8964221 |
aaactaactaagttaatgtgcatattgttttagtatcaatatttaatgggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaataga |
8964320 |
T |
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| Q |
311 |
gaaagtacaaatgaaattgatgaaactgtagatgaaagaaaaccttattttctttgcaaacacattccattcaagctcttcttctc |
396 |
Q |
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| T |
8964321 |
gaaagtacaaatgaaattgatgaaactgtagatgaaagaaaaccatattttctttgcaaatacattccattcaagctcttcatctc |
8964406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 8944943 - 8944850
Alignment:
| Q |
262 |
atatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaatgaaattgatgaaactgtagatgaaagaaaacct |
355 |
Q |
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| T |
8944943 |
atatcgtttaccactaatgaaaaaagttgaatcacagattaaaaatagagacggaaaaattgaaattgatggaactagagatgaaagaaaacct |
8944850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 16727941 - 16727786
Alignment:
| Q |
26 |
atatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtttaaggcattgactaattagatgattttttacagtaagct |
125 |
Q |
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||||||||||||||| || ||||||||||||| ||||| |||| || ||||||||| ||||||||| | |||||||||||||||||||||||||||| |
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| T |
16727941 |
atatgacatttgaacatttatattagtatatgtttgaattttcctattggtgaattatgtttaaggtgtcaactaattagatgattttttacagtaagc- |
16727843 |
T |
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| Q |
126 |
tctatagtgtacttttattttacctaaaattggttttctgtcatcattgttatactatacc |
186 |
Q |
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| T |
16727842 |
----tagtgtacttttattttgtctaaagttggttttctgtcatcattattatactatacc |
16727786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 17009003 - 17008840
Alignment:
| Q |
26 |
atatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtttaagg---ca----ttgactaattagatga-ttttttac |
117 |
Q |
| |
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||||||||||||||| || ||||||||||||| ||||| |||| || ||||||||| ||||||||| || | ||||||||||||| ||||||| |
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| T |
17009003 |
atatgacatttgaacatttatattagtatatgtttgaattttcctattggtgaattatgtttaaggtgtcaactgtcaactaattagatgatttttttat |
17008904 |
T |
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| Q |
118 |
agtaagcttctatagtgtacttttattttacctaaaattggttttctgtcatcattgttatactatacc |
186 |
Q |
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| T |
17008903 |
agtaagc-----tagtgtacttttattttgtctaaagttgattttatgtcatcattattatactatacc |
17008840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 49945901 - 49945821
Alignment:
| Q |
101 |
attagatgattttttacagtaagcttctatagtgtacttttattttacctaaaattggttttctgtcatcattgttatactatacc |
186 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
49945901 |
attagatgatttttaacagtaagct-----agtgtacttttattttgtttaaagttggttttctgtcatcattattatactatacc |
49945821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 348
Target Start/End: Complemental strand, 21685667 - 21685541
Alignment:
| Q |
223 |
ttaatgtgcatattgttttagtatcaatatttaat-gggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaa |
321 |
Q |
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||||||| |||||||||| ||| | ||| ||| || |||||||||||||||||| |||| ||||||||||||| | ||||| || | ||| || | || |
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| T |
21685667 |
ttaatgttcatattgtttcagtttaaatgtttgatagggcatatcgtttaccaccaattaaaaaagttgaattatatattaagaaaatagacagaaaaag |
21685568 |
T |
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| Q |
322 |
tgaaattgatgaaactgtagatgaaag |
348 |
Q |
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||||||||||| |||| ||||||||| |
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| T |
21685567 |
tgaaattgatggaactagagatgaaag |
21685541 |
T |
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