View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_23 (Length: 395)
Name: NF19444_low_23
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 2 - 395
Target Start/End: Complemental strand, 3421015 - 3420622
Alignment:
| Q |
2 |
cataccctcctctcctcttctacactcccaatccaattacaaaacttgaccaacacactcacaacactctcatccttctaaaatctaagcaactctcaat |
101 |
Q |
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| T |
3421015 |
cataccctcctctcttcttctacactcccaatccaattacaaaacttgaccaacacactcacaacactctcatccttctaaactctaagcaactctcaat |
3420916 |
T |
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| Q |
102 |
tcaataaacaaaatggctactaagctctgtgattcttgcaagtcaacaaaggcaacactattctgccgttctgattcagctttcctctgtctaacttgtg |
201 |
Q |
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| T |
3420915 |
tcaataaacaaaatggctactaagctctgtgattcttgcaagtcaacaaaggcaacactattctgccgttctgattcagctttcctctgtctaacctgtg |
3420816 |
T |
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| Q |
202 |
attccaacatccatgccgccaacaaactcgcctcccgccaccaccgtgtcacactctgccaagtttgtgaacaagctccggctcacgtcacctgcaaagc |
301 |
Q |
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| T |
3420815 |
attcaaacatccatgccgccaacaaactcgcctcccgccaccaccgtgtcacactctgccaagtttgtgaacaagctccggctcacgtcacctgcaaagc |
3420716 |
T |
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| Q |
302 |
cgacgcagctgttctatgtatctcctgtgatcatgatatccactctgctaaccccctagctcgtcgccacgaacgtgtccctctcaccaccacc |
395 |
Q |
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| T |
3420715 |
cgacgcagctgttctatgtatctcctgtgatcatgatatccactctgctaaccccctagctcgtcgccacgaacgtgtccccctcaccaccacc |
3420622 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 352
Target Start/End: Original strand, 48758762 - 48758918
Alignment:
| Q |
196 |
cttgtgattccaacatccatgccgccaacaaactcgcctcccgccaccaccgtgtcacactctgccaagtttgtgaacaagctccggctcacgtcacctg |
295 |
Q |
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||||||| ||||| |||| ||||| ||||||||||||||||| || | || ||||| ||||| |||| || |||||||| || || || ||||| || |
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| T |
48758762 |
cttgtgactccaaagtccacgccgctaacaaactcgcctcccgtcatcctcgcgtcactctctgtgaagtctgcgaacaagcacctgcacatgtcacgtg |
48758861 |
T |
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| Q |
296 |
caaagccgacgcagctgttctatgtatctcctgtgatcatgatatccactctgctaa |
352 |
Q |
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|||||||| |||||| ||| || ||| ||||||| | ||| |||||| ||||||| |
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| T |
48758862 |
taaagccgatgcagcttctctttgcatcacctgtgaccgtgacatccacactgctaa |
48758918 |
T |
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