View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19444_low_25 (Length: 386)
Name: NF19444_low_25
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 4 - 371
Target Start/End: Complemental strand, 8963926 - 8963559
Alignment:
| Q |
4 |
ctagattaaatagttataaaggttacctataattttataaaatttcagtacaaaaatgtaacaagagctaattttctattaaattaaaattgggcgttgt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8963926 |
ctagattaaatagttataaaggttacctatatttttataaaatttcaataccaaaatgtaacaagagctaattttctattaaattaaaattgggcgttgt |
8963827 |
T |
|
| Q |
104 |
taccacaatagagctcctcaccacatgcttcccattcttccaagtgagatatccaaatgatacttcattcttctgtgtcgttcgtcggtgttcaatcctc |
203 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
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| T |
8963826 |
taccacaatagggctcctcaccacatgcttcccattcttccaagtgagatatccaaaagataattcattcttctgtgtcattcgtcggtgttcaatcctc |
8963727 |
T |
|
| Q |
204 |
aaccggtagcttagcttctcattcttctcattgaacaccaacctatttggaataacactgacattgaagccttcaattggagtaatgctagcaacataaa |
303 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8963726 |
aacctgtagcttagcttctcattcttctcattgaacaccaacctatttggaataacaccgacattgaagccttcaattggagtaatgctagcaacataaa |
8963627 |
T |
|
| Q |
304 |
ccgtttgtccttcaccaacattggtaactgtcctgtgaaattcttgggctgtcgttggagaagaattt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8963626 |
ccgtttgtccttcaccaacattggtaactgtcctgtgaaattcttgggctgtccttggagaagaattt |
8963559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 84 - 372
Target Start/End: Complemental strand, 8975242 - 8974954
Alignment:
| Q |
84 |
aaattaaaattgggcgttgttaccacaatagagctcctcaccacatgcttcccattcttccaagtgagatatccaaatgatacttcattcttctgtgtcg |
183 |
Q |
| |
|
||||| |||||||| |||||||| ||||||| |||||| |||||||||||||||| || |||||||||||||||||| || ||||||||||| |||| | |
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| T |
8975242 |
aaattgaaattgggggttgttacaacaatagggctccttaccacatgcttcccatcctgccaagtgagatatccaaaagaaacttcattcttttgtgcca |
8975143 |
T |
|
| Q |
184 |
ttcgtcggtgttcaatcctcaaccggtagcttagcttctcattcttctcattgaacaccaacctatttggaataacactgacattgaagccttcaattgg |
283 |
Q |
| |
|
|| | | ||||||||||||| |||||||| ||||| || |||| ||||||||||||| ||||||| ||||| || |||| ||| ||||| ||| | |
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|
| T |
8975142 |
ctcttgcatcttcaatcctcaacttgtagcttaatttctcgtttttcttattgaacaccaacttatttgggataactctaacatggaacccttcgattcg |
8975043 |
T |
|
| Q |
284 |
agtaatgctagcaacataaaccgtttgtccttcaccaacattggtaactgtcctgtgaaattcttgggctgtcgttggagaagaatttg |
372 |
Q |
| |
|
||||||| ||||||||||| || || ||||| |||||||||||||| ||| || ||||||||||||| ||| ||| ||||||||||| |
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|
| T |
8975042 |
agtaatgtgagcaacataaatcgattttccttgaccaacattggtaattgttctatgaaattcttgggtggtccttgaagaagaatttg |
8974954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 84 - 350
Target Start/End: Original strand, 8945238 - 8945504
Alignment:
| Q |
84 |
aaattaaaattgggcgttgttaccacaatagagctcctcaccacatgcttcccattcttccaagtgagatatccaaatgatacttcattcttctgtgtcg |
183 |
Q |
| |
|
||||| ||||||| || ||||||||||||| ||||||||||||||||||||||| || ||| |||| || ||||| | ||||||||| || |||||| |
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|
| T |
8945238 |
aaattgaaattggtggtagttaccacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtca |
8945337 |
T |
|
| Q |
184 |
ttcgtcggtgttcaatcctcaaccggtagcttagcttctcattcttctcattgaacaccaacctatttggaataacactgacattgaagccttcaattgg |
283 |
Q |
| |
|
||| || ||||||||||||| |||||||||| |||||||||||| |||||||| |||| ||||||| ||| |||| ||| | | ||||||| || |
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|
| T |
8945338 |
ttctagggccttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggatagcactaacacggtatccttcaacagg |
8945437 |
T |
|
| Q |
284 |
agtaatgctagcaacataaaccgtttgtccttcaccaacattggtaactgtcctgtgaaattcttgg |
350 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
8945438 |
cataatgctagcaacataaatggcttgtccctcaccaacattggtaactgttctgtgaaattcttgg |
8945504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 194 - 370
Target Start/End: Complemental strand, 8958722 - 8958546
Alignment:
| Q |
194 |
ttcaatcctcaaccggtagcttagcttctcattcttctcattgaacaccaacctatttggaataacactgacattgaagccttcaattggagtaatgcta |
293 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||| |||||| | ||||| ||||||||||||| ||| ||||||| ||||||||||| |
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|
| T |
8958722 |
ttcaatcctcaacttgtagcttagtttctcattcttctcattgaataccaacttgtttgggataacactgacatggaacccttcaacctgagtaatgcta |
8958623 |
T |
|
| Q |
294 |
gcaacataaaccgtttgtccttcaccaacattggtaactgtcctgtgaaattcttgggctgtcgttggagaagaatt |
370 |
Q |
| |
|
| ||||||||| |||| ||| |||||||||||||||| ||| || ||||||||||||| |||| ||| ||||||||| |
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|
| T |
8958622 |
gaaacataaactgtttctccctcaccaacattggtaattgttctatgaaattcttgggttgtccttgaagaagaatt |
8958546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 9947838 - 9947959
Alignment:
| Q |
213 |
cttagcttctcattcttctcattgaacaccaacctatttggaataacactgacattgaagccttcaattggagtaatgctagcaacataaaccgtttgtc |
312 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | ||||| ||||||||||||| || |||| || ||||||||| | ||||||||||| |||| | |
|
|
| T |
9947838 |
cttagcttctcattcttctcatggaacaccaacttgtttgggataacactgacatgaaaccctttgataggagtaatgttggcaacataaactgtttatg |
9947937 |
T |
|
| Q |
313 |
cttcaccaacattggtaactgt |
334 |
Q |
| |
|
| |||||||||||||| ||||| |
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|
| T |
9947938 |
cctcaccaacattggtcactgt |
9947959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 349
Target Start/End: Original strand, 34962131 - 34962286
Alignment:
| Q |
194 |
ttcaatcctcaaccggtagcttagcttctcattcttctcattgaacaccaacctatttggaataacactgacattgaagccttcaattggagtaatgcta |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||| |||||| ||||| || |||| |||||||| ||||||| |
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|
| T |
34962131 |
ttcaatcctcaatttgtagcttagcttctcattcttctcattaaacaccaaattgtttgggataacagtgacacgaaaccctttaattggagcaatgcta |
34962230 |
T |
|
| Q |
294 |
gcaacataaaccgtttgtccttcaccaacattggtaactgtcctgtgaaattcttg |
349 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
34962231 |
gcaacataaattgcttgtccgtcaccaacattggtaactgttctacgaaattcttg |
34962286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 25927943 - 25928055
Alignment:
| Q |
218 |
cttctcattcttctcattgaacaccaacctatttggaataacactgacattgaagccttcaattggagtaatgctagcaacataaaccgtttgtccttca |
317 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | ||||| |||||||| ||| || |||| ||| | | ||||||||||||| |||| | | ||||| || |
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|
| T |
25927943 |
cttctcattcttctcattaaacactaacttgtttgggataacactaacacgaaaacctttaatagcaataatgctagcaacgtaaatcatatgtccctct |
25928042 |
T |
|
| Q |
318 |
ccaacattggtaa |
330 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25928043 |
ccaacattggtaa |
25928055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 346
Target Start/End: Original strand, 21686422 - 21686666
Alignment:
| Q |
102 |
gttaccacaatagagctcctcaccacatgcttcccattcttccaagtgagatatccaaatgatacttcattcttctgtgtcgttcgtcggtgttcaatcc |
201 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||||||| | ||||| ||| || || || | ||||| |||||| |||||| ||| | || ||| ||| |
|
|
| T |
21686422 |
gttaccacaatagggctcctaaccacatgtttcccatcccgccaagagaggtaaccgaaggctactttattcttttgtgtcattcttgggccttcgatct |
21686521 |
T |
|
| Q |
202 |
tcaaccggtagcttagcttctcattcttctcattgaacaccaacctatttggaataacactgacattgaagccttcaattggagtaatgctagcaacata |
301 |
Q |
| |
|
||||| |||||||| |||||| ||||||| |||||||||||| |||||||||||||| ||||| ||| |||| ||| |||||||||||||||| ||| |
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|
| T |
21686522 |
tcaacttgtagcttatcttctcgttcttcttcttgaacaccaacttatttggaataacagtgacacggaaccctttaatgggagtaatgctagcaaaata |
21686621 |
T |
|
| Q |
302 |
aaccgtttgtccttcaccaacattggtaactgtcctgtgaaattc |
346 |
Q |
| |
|
|| | | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
21686622 |
tgttgtctttttctcaccaacatttgtaactgttctgtgaaattc |
21686666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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