View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19444_low_27 (Length: 376)
Name: NF19444_low_27
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 132 - 348
Target Start/End: Original strand, 43383301 - 43383517
Alignment:
| Q |
132 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43383301 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
43383400 |
T |
|
| Q |
232 |
ggcattaaccctcctcctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaatc |
331 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43383401 |
ggcattaaccctccacctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttactttctaattcaaatc |
43383500 |
T |
|
| Q |
332 |
caaagaacaagaaagca |
348 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43383501 |
caaagaacaagaaagca |
43383517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 133 - 344
Target Start/End: Original strand, 25870023 - 25870237
Alignment:
| Q |
133 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagag |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25870023 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagag |
25870122 |
T |
|
| Q |
233 |
gcattaaccctcctcctaatttcagaagacaacaacttg---ttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25870123 |
gcattaaccctcctcctaatttcagaagacaacaacaacaacttgtgactccagaagaacaggaaggtgctgcttctttgcttttacttgctaattcaaa |
25870222 |
T |
|
| Q |
330 |
tccaaagaacaagaa |
344 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25870223 |
tccaaagaacaagaa |
25870237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43383185 - 43383282
Alignment:
| Q |
1 |
gataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatgattctgttaatgttactggtaagaagaagcgtaaggaattgggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43383185 |
gataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatga------tactgttactggtaagaagaagagtaaggaattgggtg |
43383278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 25869981 - 25870009
Alignment:
| Q |
76 |
aagaagaagcgtaaggaattgggtgggga |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25869981 |
aagaagaagcgtaaggaattgggtgggga |
25870009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University