View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_28 (Length: 375)
Name: NF19444_low_28
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 50 - 358
Target Start/End: Complemental strand, 3543952 - 3543644
Alignment:
| Q |
50 |
tacaaccggcgtaggtctcggctacggcatcacaatcgccgtaagcatccttgtcctcatctccaccatcatgctcgtttcctacctctgcgtccgtata |
149 |
Q |
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| T |
3543952 |
tacaaccggcgtaggtctcggctacggcatcacaatcgccgtaagcatccttgtcctcatctccaccatcatgctcgtttcctacctttgcgtccgtata |
3543853 |
T |
|
| Q |
150 |
aaatcacaaggacgcagagactccttccatctcgacatccaccatcaacctcatactactatcaactcgggctcggctcagcccggtccatttatcatgg |
249 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3543852 |
aaatcacacggacgcagagactccttccatctcgacatccaccatcaacctcatactactatcaactcgggcttggctcagcccggtccatttatcatgg |
3543753 |
T |
|
| Q |
250 |
gcctagaaaagcccatgattgaatcatatccaaagatgatacttggagagagtagaagattgcccaaacccaatgatggccagtgtgctatttgtttgac |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3543752 |
gcctagaaaagcccatgattgaatcatatccaaagatgatacttggagagagtagaagattgcccaaacccaatggtggccagtgtgctatttgtttgac |
3543653 |
T |
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| Q |
350 |
tgattatct |
358 |
Q |
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||||||||| |
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| T |
3543652 |
tgattatct |
3543644 |
T |
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