View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19444_low_29 (Length: 363)

Name: NF19444_low_29
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19444_low_29
NF19444_low_29
[»] chr8 (16 HSPs)
chr8 (1-344)||(35900887-35901230)
chr8 (166-254)||(9548066-9548154)
chr8 (153-240)||(29797944-29798034)
chr8 (150-233)||(11114262-11114345)
chr8 (177-271)||(8777757-8777851)
chr8 (174-246)||(13209977-13210049)
chr8 (177-247)||(15114629-15114699)
chr8 (150-255)||(44080675-44080781)
chr8 (166-263)||(33557793-33557889)
chr8 (155-253)||(7974792-7974890)
chr8 (154-254)||(8637234-8637334)
chr8 (181-233)||(11196249-11196301)
chr8 (177-257)||(9294589-9294671)
chr8 (155-253)||(29110965-29111063)
chr8 (157-212)||(43295213-43295265)
chr8 (166-258)||(28725587-28725678)
[»] chr5 (26 HSPs)
chr5 (151-261)||(39030561-39030671)
chr5 (151-275)||(33669929-33670053)
chr5 (150-261)||(34252715-34252826)
chr5 (177-261)||(33498359-33498443)
chr5 (155-261)||(14646368-14646474)
chr5 (154-259)||(17555949-17556055)
chr5 (155-272)||(16500544-16500661)
chr5 (154-255)||(30293380-30293481)
chr5 (154-253)||(968287-968386)
chr5 (178-253)||(19644427-19644502)
chr5 (155-249)||(2424444-2424538)
chr5 (151-253)||(20185315-20185416)
chr5 (155-253)||(39030569-39030667)
chr5 (147-267)||(5727708-5727827)
chr5 (155-255)||(15119301-15119401)
chr5 (166-233)||(23344907-23344974)
chr5 (195-272)||(4576866-4576943)
chr5 (174-253)||(42324905-42324984)
chr5 (155-225)||(9530947-9531017)
chr5 (198-254)||(504129-504183)
chr5 (154-258)||(12619626-12619724)
chr5 (150-269)||(33669917-33670036)
chr5 (147-253)||(17234531-17234636)
chr5 (180-228)||(17858199-17858247)
chr5 (198-254)||(26835279-26835335)
chr5 (201-261)||(42708580-42708640)
[»] chr2 (32 HSPs)
chr2 (147-268)||(38935361-38935482)
chr2 (150-261)||(16564376-16564485)
chr2 (150-261)||(31469069-31469180)
chr2 (140-262)||(16180426-16180548)
chr2 (150-268)||(24037585-24037703)
chr2 (154-253)||(944777-944876)
chr2 (150-253)||(10459272-10459375)
chr2 (165-268)||(2884247-2884350)
chr2 (150-263)||(41912078-41912192)
chr2 (166-259)||(7932743-7932836)
chr2 (150-263)||(31469072-31469185)
chr2 (155-258)||(43398844-43398947)
chr2 (151-253)||(43042172-43042274)
chr2 (161-269)||(24037574-24037682)
chr2 (153-253)||(41374533-41374633)
chr2 (150-261)||(29291065-29291176)
chr2 (154-260)||(11386306-11386414)
chr2 (200-268)||(15660702-15660770)
chr2 (197-261)||(17437174-17437238)
chr2 (154-234)||(35311190-35311269)
chr2 (198-259)||(33829389-33829450)
chr2 (151-211)||(4445866-4445926)
chr2 (153-209)||(41099028-41099084)
chr2 (149-219)||(1862657-1862725)
chr2 (154-247)||(13453593-13453686)
chr2 (169-234)||(19924329-19924394)
chr2 (151-252)||(25089917-25090017)
chr2 (154-243)||(35693934-35694023)
chr2 (140-254)||(5713216-5713330)
chr2 (151-261)||(10459268-10459378)
chr2 (201-259)||(44726834-44726892)
chr2 (150-258)||(38935364-38935472)
[»] chr1 (19 HSPs)
chr1 (150-261)||(3739815-3739926)
chr1 (153-271)||(3693991-3694109)
chr1 (150-261)||(19758271-19758383)
chr1 (150-262)||(37918915-37919027)
chr1 (154-261)||(30693333-30693440)
chr1 (169-258)||(5056314-5056403)
chr1 (151-260)||(29855060-29855169)
chr1 (147-247)||(31784748-31784847)
chr1 (150-254)||(47543604-47543708)
chr1 (150-261)||(3739812-3739923)
chr1 (150-245)||(6061461-6061556)
chr1 (155-253)||(29846639-29846737)
chr1 (153-224)||(26265783-26265854)
chr1 (150-253)||(29855064-29855167)
chr1 (200-268)||(24023975-24024043)
chr1 (201-253)||(35310304-35310356)
chr1 (150-254)||(5693575-5693676)
chr1 (151-221)||(27527707-27527777)
chr1 (154-242)||(15343239-15343326)
[»] chr4 (18 HSPs)
chr4 (153-261)||(12276818-12276926)
chr4 (151-268)||(30848592-30848711)
chr4 (154-252)||(54235227-54235325)
chr4 (147-253)||(4423155-4423261)
chr4 (155-224)||(5496857-5496926)
chr4 (155-253)||(24980631-24980729)
chr4 (150-251)||(54009985-54010085)
chr4 (153-253)||(18995137-18995235)
chr4 (198-268)||(55827290-55827360)
chr4 (154-251)||(48514541-48514637)
chr4 (200-259)||(33759429-33759487)
chr4 (198-261)||(55762913-55762976)
chr4 (238-268)||(51495064-51495094)
chr4 (188-253)||(55617015-55617081)
chr4 (188-253)||(55624319-55624385)
chr4 (201-254)||(3249690-3249743)
chr4 (209-258)||(40391257-40391306)
chr4 (151-207)||(2871550-2871606)
[»] chr6 (22 HSPs)
chr6 (147-253)||(31323820-31323926)
chr6 (155-261)||(35003757-35003863)
chr6 (150-253)||(30531184-30531287)
chr6 (150-242)||(2282415-2282507)
chr6 (173-252)||(9829898-9829977)
chr6 (152-261)||(30531181-30531290)
chr6 (147-258)||(31323812-31323923)
chr6 (166-260)||(1986203-1986297)
chr6 (150-258)||(14446697-14446805)
chr6 (153-261)||(7343245-7343353)
chr6 (154-269)||(33822278-33822393)
chr6 (188-262)||(8437813-8437887)
chr6 (166-260)||(24547189-24547283)
chr6 (151-249)||(28004633-28004731)
chr6 (147-192)||(14222860-14222905)
chr6 (155-271)||(8211772-8211887)
chr6 (155-253)||(1937651-1937749)
chr6 (214-268)||(8830875-8830929)
chr6 (203-253)||(28596081-28596131)
chr6 (188-253)||(28004662-28004727)
chr6 (154-259)||(31522613-31522717)
chr6 (214-262)||(8211848-8211896)
[»] chr3 (20 HSPs)
chr3 (147-253)||(26914448-26914553)
chr3 (153-253)||(47783084-47783184)
chr3 (150-253)||(32221471-32221574)
chr3 (154-268)||(32221461-32221575)
chr3 (151-255)||(31280159-31280263)
chr3 (155-263)||(26104214-26104322)
chr3 (140-245)||(5307341-5307446)
chr3 (154-251)||(30806939-30807036)
chr3 (145-242)||(45610451-45610548)
chr3 (214-259)||(46829107-46829152)
chr3 (155-231)||(46733045-46733121)
chr3 (154-225)||(11256559-11256630)
chr3 (153-268)||(29637424-29637539)
chr3 (214-261)||(46829047-46829094)
chr3 (201-255)||(40905806-40905860)
chr3 (155-223)||(37330963-37331031)
chr3 (150-228)||(15282640-15282718)
chr3 (155-253)||(29637439-29637537)
chr3 (155-207)||(32729508-32729560)
chr3 (238-270)||(43575836-43575868)
[»] chr7 (19 HSPs)
chr7 (150-261)||(18731991-18732101)
chr7 (155-255)||(23971191-23971290)
chr7 (166-262)||(47967910-47968006)
chr7 (154-259)||(14773470-14773576)
chr7 (154-259)||(15223922-15224028)
chr7 (151-249)||(16866403-16866501)
chr7 (162-258)||(6803308-6803404)
chr7 (154-253)||(44816473-44816572)
chr7 (154-258)||(5026141-5026242)
chr7 (156-251)||(4259313-4259408)
chr7 (154-233)||(32652411-32652490)
chr7 (153-230)||(3769757-3769834)
chr7 (149-253)||(3719883-3719987)
chr7 (154-257)||(30794443-30794546)
chr7 (159-253)||(16866407-16866501)
chr7 (195-271)||(1554881-1554957)
chr7 (145-220)||(5026136-5026211)
chr7 (147-261)||(6803305-6803419)
chr7 (199-261)||(34515855-34515917)
[»] scaffold0067 (1 HSPs)
scaffold0067 (150-269)||(35930-36049)
[»] scaffold0034 (1 HSPs)
scaffold0034 (174-253)||(94952-95031)
[»] scaffold0027 (1 HSPs)
scaffold0027 (150-253)||(13180-13283)
[»] scaffold0072 (1 HSPs)
scaffold0072 (155-254)||(20368-20467)
[»] scaffold0009 (1 HSPs)
scaffold0009 (153-228)||(51225-51300)
[»] scaffold2113 (2 HSPs)
scaffold2113 (151-261)||(575-684)
scaffold2113 (150-268)||(578-695)
[»] scaffold0236 (1 HSPs)
scaffold0236 (154-268)||(14525-14638)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 35900887 - 35901230
Alignment:
Q  1 tataaggacagtgccaaatatagaggaatgacatggctaagtttagtgttgctctctttatttttcataaactttgatgtgagacgtttattcacacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35900887 tataaggacagtgccaaatatagaggaatgacatggctaagtttagtgctgctctctttatttttcataaactttgatgtgagacgtttattcacacttt 35900986  T
Q  101 tggttttcttttttcgacgtaggacttccatttattcactactttttctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35900987 tggttttcttttttcgacgtaggacttccatttattcactactttttctgttccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtac 35901086  T
Q  201 aaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggatgaagtactttgtaccttcaatggtattgacatattatg 300  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35901087 aaattttgagcccaatacattaacttttgttgacctatttttgcttatattttaggacggatgaagtactctgtaccttcaatggtattgacatattatg 35901186  T
Q  301 acaatgggaatgtgaacattttaattggccataatccaactcat 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35901187 acaatgggaatgtgaacattttaattggccataatccaactcat 35901230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 9548066 - 9548154
Alignment:
Q  166 aaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||||||| | ||||||| ||||||||||    
T  9548066 aaaaatgagtcaacataagttgatgtatttagtacaaattttgaaccaaatataataatttttgttgaacaatttttgtttatatttta 9548154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 29797944 - 29798034
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaac---ccaatacattaatttttgttgacctattt 240  Q
    ||||||| ||||||||||||||| ||||||| || ||||| || |||||||||||||||   | |||||||||||||||||||||| ||||    
T  29797944 ccaaaatgtaagcaaaaatgagttaacataaatttatgtatttggtacaaattttgaaccaacaaatacattaatttttgttgaccaattt 29798034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 11114345 - 11114262
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttga 233  Q
    ||||||||||||||| ||||||   |||||||||||||||||| || ||| ||||||| |||  ||||||||||||||||||||    
T  11114345 gtcccaaaatataagtaaaaattgatcaacataagttgatgtatttggtataaattttaaactgaatacattaatttttgttga 11114262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 8777851 - 8777757
Alignment:
Q  177 aacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggatgaagtactt 271  Q
    |||||||||| ||||| ||| || |||||||||||| |||| ||||| ||||||||| | ||||||| |||||||||| |||||| | |||||||    
T  8777851 aacataagttaatgtatttaatataaattttgaaccaaatatattaacttttgttgatcaatttttgtttatattttaagacggaaggagtactt 8777757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 13210049 - 13209977
Alignment:
Q  174 gtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    |||||||||||||||||||  |  ||||||||||||||| |||||||||| ||||||||| | ||||||||||    
T  13210049 gtcaacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttgatcaatttttgctt 13209977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 15114699 - 15114629
Alignment:
Q  177 aacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctta 247  Q
    ||||||| |||| ||| |||| |||||||||||| | |||||||||||||||||||||| |||||| ||||    
T  15114699 aacataaattgacgtatttagaacaaattttgaatcaaatacattaatttttgttgaccaattttttctta 15114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 44080675 - 44080781
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgta-attagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttat 248  Q
    |||||||||||||| ||||||||   |||||||||||||| || ||  ||| |||||||||    |||||||||||||||||||| | |||||| |||||    
T  44080675 gtcccaaaatataaacaaaaatggaccaacataagttgatatatatctgtataaattttgagttaaatacattaatttttgttgatcaatttttacttat 44080774  T
Q  249 attttag 255  Q
    |||||||    
T  44080775 attttag 44080781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 33557793 - 33557889
Alignment:
Q  166 aaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggatg 263  Q
    |||||||| |||||||||||| ||||| ||  ||||||||||||||  |||||||||| |||| |||| | |||||| ||||| ||||||||| ||||    
T  33557793 aaaaatga-tcaacataagtttatgtatttgatacaaattttgaactaaatacattaacttttattgatcaatttttacttatgttttaggacagatg 33557889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 7974792 - 7974890
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||||||  || |||| |||||||||| |||| ||| || |||||||||||||    |||||||||| |||| |||||| ||||||| |||||||||    
T  7974792 aaaatataaaaaagaatgggtcaacataaattgacgtatttggtacaaattttgacaaaaatacattaacttttattgaccaatttttgtttatatttt 7974890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 8637334 - 8637234
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||||||||||||| ||||||||   || |||||||| || |  ||||||||||||| |||| || ||||||| |||||  | | |||||||||||||    
T  8637334 caaaatataagcaaaattgagtcaaagaaaattgatgtatttggaccaaattttgaaccaaatatatcaattttttttgactaactattgcttatatttt 8637235  T
Q  254 a 254  Q
    |    
T  8637234 a 8637234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 11196249 - 11196301
Alignment:
Q  181 taagttgatgtaattagtacaaattttgaacccaatacattaatttttgttga 233  Q
    |||||||||||| ||| |||||||||||||   ||||||||||||||||||||    
T  11196249 taagttgatgtatttaatacaaattttgaattaaatacattaatttttgttga 11196301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 9294589 - 9294671
Alignment:
Q  177 aacataagttgatgtaattagtacaaattttgaaccca--atacattaatttttgttgacctatttttgcttatattttagga 257  Q
    ||||| |||||||||| ||||||||||||||||||  |  ||||||| ||||||||||||   |||||| ||||| |||||||    
T  9294589 aacattagttgatgtatttagtacaaattttgaactaaatatacattgatttttgttgacaattttttgtttataatttagga 9294671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 29110965 - 29111063
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||| ||||||| |||  ||||| |||| |  ||||| || ||| |||||||||||| |||||||||| ||| ||||| | ||||||| |||||||||    
T  29110965 aaaatgtaagcaataataggtcaatataaatgaatgtatttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttgtttatatttt 29111063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 43295213 - 43295265
Alignment:
Q  157 aatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacc 212  Q
    ||||||||||||||||  ||||||||||||||||||    ||||||||||||||||    
T  43295213 aatataagcaaaaatggatcaacataagttgatgta---tgtacaaattttgaacc 43295265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 28725678 - 28725587
Alignment:
Q  166 aaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggac 258  Q
    ||||||||||||| | |||||||||||  | ||| ||||| |||| | |||||| ||| |||| |||||| ||||||||||| ||||| ||||    
T  28725678 aaaaatgagtcaataaaagttgatgtatct-gtataaattctgaatcaaatacaataaattttattgaccaatttttgcttacattttgggac 28725587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 39030671 - 39030561
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    ||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||    
T  39030671 tcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatat 39030572  T
Q  251 tttaggacgga 261  Q
    ||||| |||||    
T  39030571 tttagaacgga 39030561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 33669929 - 33670053
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    ||||||||| |||||||||||| |||||||||||||  ||||  | ||||||||||| |||| |||||||||| |||| |||||| ||||||||||| ||    
T  33669929 tcccaaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgcttacat 33670028  T
Q  251 tttaggacggatgaagtactttgta 275  Q
    ||| ||||||||| |||| ||||||    
T  33670029 tttgggacggatggagtattttgta 33670053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 34252826 - 34252715
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| |||||||||||| || |||||||||||||| |  | | | |||||||||||| |||||||||| ||||||||||| ||||||||||| |    
T  34252826 gtcccaaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgttgaccaatttttgcttaca 34252727  T
Q  250 ttttaggacgga 261  Q
    |||| |||||||    
T  34252726 ttttgggacgga 34252715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 33498443 - 33498359
Alignment:
Q  177 aacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacgga 261  Q
    |||||||||||||||| || |||||||||||||||| |||| ||| |||||||||| || | |||||||||||||||||||||||    
T  33498443 aacataagttgatgtattttgtacaaattttgaaccaaatatattgatttttgttggccaacttttgcttatattttaggacgga 33498359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 14646368 - 14646474
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    |||||||||| |||||| |||||| |||| || ||||| ||||||||||||||||| |  |||||||||||||| || | | ||||| |||||||||||     
T  14646368 aaaatataagtaaaaataagtcaatataaattaatgtatttagtacaaattttgaatcatatacattaatttttatttatcaattttcgcttatattttg 14646467  T
Q  255 ggacgga 261  Q
    |||||||    
T  14646468 ggacgga 14646474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 17555949 - 17556055
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaa-tttttgttgacctatttttgcttatattt 252  Q
    ||||||||||| |||||||||||||| ||||||||| || ||  || ||||||||||||  ||||||||| |||||||| ||| |||||| |||||||||    
T  17555949 caaaatataagtaaaaatgagtcaacgtaagttgatatatttgatataaattttgaaccacatacattaactttttgttcaccaatttttacttatattt 17556048  T
Q  253 taggacg 259  Q
    || ||||    
T  17556049 taagacg 17556055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 16500661 - 16500544
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    |||||||||| |||||| |  |||||||| ||||||||  | |   |||||||||||| | |||||||||||||||||| | ||||||||||| ||||      
T  16500661 aaaatataagtaaaaattaaacaacataaattgatgtatctggattaaattttgaaccaattacattaatttttgttgaacaatttttgcttacatttgt 16500562  T
Q  255 ggacggatgaagtacttt 272  Q
    ||||||||||||||||||    
T  16500561 ggacggatgaagtacttt 16500544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 30293481 - 30293380
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||  || |||||||||| | |||||||| | ||||||||| | | |||| ||||||||||    
T  30293481 caaaatataagtaaaaatgagtcaacatatgttgatgtatttgatataaattttgaatcaaatacattgacttttgttgatcaaattttacttatatttt 30293382  T
Q  254 ag 255  Q
    ||    
T  30293381 ag 30293380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 968287 - 968386
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||| |||| |||| || |||||  |||||||||||| || |||||||||||||||  |||| ||||||||||||||||  |||||| ||||||||||    
T  968287 caaaatgtaagtaaaagtgggtcaatttaagttgatgtatttggtacaaattttgaactaaatatattaatttttgttgactcatttttacttatatttt 968386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 19644427 - 19644502
Alignment:
Q  178 acataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||| | ||| || ||||||||||    
T  19644427 acataagttgatgtatttagtataaattttgaaccaaatacgttaatttttgttgatcaattcttacttatatttt 19644502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 2424444 - 2424538
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||||||||||  || |||||||| |||||||  | |||||||||||||||| |||||||||| |||| | |||| ||||||| |||||    
T  2424444 aaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaacttttatcgaccaatttttgtttata 2424538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 253
Target Start/End: Original strand, 20185315 - 20185416
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    ||||||||| |||  |||||||||| || |||||| |||||| || |||||||||||||||| |||||||||| ||||||| ||| ||||| ||||| ||    
T  20185315 tcccaaaatgtaaataaaaatgagttaatataagtcgatgtattttgtacaaattttgaaccaaatacattaa-ttttgttaaccaattttagcttacat 20185413  T
Q  251 ttt 253  Q
    |||    
T  20185414 ttt 20185416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 39030569 - 39030667
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||||||||||||||  ||||||| ||||| ||||| || ||  ||| |||| ||| |||||||||| ||||||||||  |||||||||||||||||    
T  39030569 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatatttt 39030667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 5727827 - 5727708
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    |||||| |||||| |||| ||||||  ||||  |||||||||||||  | ||||||||||| || |||||| |||||||||| |||||| |||||| |||    
T  5727827 tctgtctcaaaatgtaagtaaaaataggtcacaataagttgatgtatctggtacaaatttt-aaaccaatatattaatttttattgaccaatttttactt 5727729  T
Q  247 atattttaggacggatgaagt 267  Q
    | ||||| ||||||| |||||    
T  5727728 acattttgggacggaagaagt 5727708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 15119401 - 15119301
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    ||||||||| |||||||  || || ||||||| || || ||| ||||||||||||| | |||||||||| |||| |||||  ||||||||||||||||||    
T  15119401 aaaatataaacaaaaattggttaatataagttaatatatttaatacaaattttgaatcaaatacattaagttttattgactaatttttgcttatatttta 15119302  T
Q  255 g 255  Q
    |    
T  15119301 g 15119301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 23344974 - 23344907
Alignment:
Q  166 aaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttga 233  Q
    |||||||||||| || |||||||| || |||||| |||||||||||  ||||||||||||||||||||    
T  23344974 aaaaatgagtcagcaaaagttgatatacttagtataaattttgaactaaatacattaatttttgttga 23344907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 4576943 - 4576866
Alignment:
Q  195 tagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggatgaagtacttt 272  Q
    ||||||| ||||||||||  ||||||||| || ||| |||  || |||||||||||||| ||||||||||||||||||    
T  4576943 tagtacagattttgaaccgcatacattaacttctgtcgacaaatatttgcttatattttgggacggatgaagtacttt 4576866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 42324905 - 42324984
Alignment:
Q  174 gtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||| |||| |||||||| || ||| ||||||| || | |||||||||| ||||||||||| |||||| ||||||||||    
T  42324905 gtcaatataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaatttttacttatatttt 42324984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 9531017 - 9530947
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatt 225  Q
    ||||| |||||||||||||||||| |||| ||| |||| ||  || |||||||||||| ||||||||||||    
T  9531017 aaaatgtaagcaaaaatgagtcaatataaattggtgtatttgatataaattttgaaccaaatacattaatt 9530947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 504183 - 504129
Alignment:
Q  198 tacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    |||||||| |||||| ||||  |||||||||||||||| ||||||||||||||||||    
T  504183 tacaaattctgaaccaaata--ttaatttttgttgaccgatttttgcttatatttta 504129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 12619724 - 12619626
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||||||||||||||||  |||||||||||||||||| ||  || |||||||||| | |||      || |||||||| | | |||||||||||||||    
T  12619724 caaaatataagcaaaaatggatcaacataagttgatgtatttgatataaattttgaatcaaat------atatttgttgatcaacttttgcttatatttt 12619631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 33670036 - 33669917
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| |||||||||||  ||||| | ||||| ||||| || ||  ||| |||| |||  ||||| ||| || |||||||| ||||||||||| |    
T  33670036 gtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttaca 33669937  T
Q  250 ttttaggacggatgaagtac 269  Q
    |||| ||| ||||| |||||    
T  33669936 ttttgggatggatggagtac 33669917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 17234531 - 17234636
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    |||||| |||||||||||||||||||||| || |||| || ||||| ||  |||||||||| |||  |||| |||||||||| || ||| ||||  ||||    
T  17234531 tctgtcacaaaatataagcaaaaatgagt-aatataaattaatgtatttgctacaaattttaaacaaaatatattaatttttatttaccaatttccgctt 17234629  T
Q  247 atatttt 253  Q
     ||||||    
T  17234630 ttatttt 17234636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 17858247 - 17858199
Alignment:
Q  180 ataagttgatgtaattagtacaaattttgaacccaatacattaattttt 228  Q
    |||||||||||||  |  ||||||||||||||| |||||||||||||||    
T  17858247 ataagttgatgtatctgatacaaattttgaaccaaatacattaattttt 17858199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 26835279 - 26835335
Alignment:
Q  198 tacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    |||||||||| |||| |||| ||||| |||||||||||  |||||| ||||||||||    
T  26835279 tacaaatttttaaccaaatatattaacttttgttgaccactttttgtttatatttta 26835335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 42708640 - 42708580
Alignment:
Q  201 aaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacgga 261  Q
    ||||||| |||  |||||||||| |||||||||   |||||||| ||||||||||||||||    
T  42708640 aaattttcaactaaatacattaacttttgttgattaatttttgcgtatattttaggacgga 42708580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 38935361 - 38935482
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||  |||||||||| |||||||||   ||||||| ||    
T  38935361 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttgagtaatttttgttt 38935460  T
Q  247 atattttaggacggatgaagta 268  Q
    ||||||| ||||||||| ||||    
T  38935461 atatttttggacggatggagta 38935482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 16564485 - 16564376
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||  | ||| |||  ||||| |||| |||||||||||||    
T  16564485 gtcccaaaatgtaagtaaaaatgagtcaacataagttgatgtatttggtacaaattttgaacc--aaacactaacgtttgtagaccaatttttgcttata 16564388  T
Q  250 ttttaggacgga 261  Q
    ||||||||||||    
T  16564387 ttttaggacgga 16564376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 31469180 - 31469069
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    ||||||||||||||||||||||  ||||||  ||||| ||||| ||  |||||||||| |||| |||||||||| ||||||||||| |||||||||||||    
T  31469180 gtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 31469081  T
Q  250 ttttaggacgga 261  Q
    |||| |||||||    
T  31469080 ttttgggacgga 31469069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 140 - 262
Target Start/End: Original strand, 16180426 - 16180548
Alignment:
Q  140 tactttttctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatt 239  Q
    |||||| || |||||||||| ||||||||||| ||||||||||| |||||||| | | || |||||||||||| |||||||||| ||||||||||| | |    
T  16180426 tactttctccgtcccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgaccaaat 16180525  T
Q  240 tttgcttatattttaggacggat 262  Q
    ||| |||||||||| ||| ||||    
T  16180526 tttacttatattttgggatggat 16180548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 150 - 268
Target Start/End: Original strand, 24037585 - 24037703
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||||||  ||||||| || || ||| |||| |||||||||||      
T  24037585 gtcctaaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaatacatcaacttatgtcgacccatttttgcttact 24037684  T
Q  250 ttttaggacggatgaagta 268  Q
    |||||||||||| ||||||    
T  24037685 ttttaggacggaggaagta 24037703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 944876 - 944777
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||| |||| |||||| |||||||||||||||||||| || |||||||||||||||  |||||||||| |||| |||| | |||||||||||||||||    
T  944876 caaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaacttttattgatcgatttttgcttatatttt 944777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 10459375 - 10459272
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| |||||||| ||  ||||||||||||||||| |  |  ||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  10459375 gtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatttttgcttata 10459276  T
Q  250 tttt 253  Q
    ||||    
T  10459275 tttt 10459272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 2884350 - 2884247
Alignment:
Q  165 caaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggatga 264  Q
    |||||||||||||| |||| || || || ||  || |||||||||||| |||||||||||||||||||||  |||||| ||||||||||||||||||||     
T  2884350 caaaaatgagtcaatataatttaatatatttgatataaattttgaaccaaatacattaatttttgttgacaaatttttacttatattttaggacggatgg 2884251  T
Q  265 agta 268  Q
    ||||    
T  2884250 agta 2884247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 41912078 - 41912192
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgaccta-tttttgcttat 248  Q
    |||| |||||| ||| |||||| |||||||||||||| || ||  | ||||||||||||||||  ||||||||||||||||||| | | |||||||||||    
T  41912078 gtcctaaaatacaagtaaaaataagtcaacataagttaatctagctggtacaaattttgaaccagatacattaatttttgttgaacaattttttgcttat 41912177  T
Q  249 attttaggacggatg 263  Q
    ||||||| |||||||    
T  41912178 attttagaacggatg 41912192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 7932836 - 7932743
Alignment:
Q  166 aaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacg 259  Q
    |||||||||||||||||||||||||||  |  || |||||||||||| ||||| |||| ||||||||||  |||||||||||||||||| ||||    
T  7932836 aaaaatgagtcaacataagttgatgtatctgatataaattttgaaccaaatacgttaacttttgttgactaatttttgcttatattttaagacg 7932743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 31469072 - 31469185
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||| || ||  ||| |||| | | |||||||||| ||| ||||||| |||||||||||||    
T  31469072 gtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgcttata 31469171  T
Q  250 ttttaggacggatg 263  Q
    |||| |||||||||    
T  31469172 ttttgggacggatg 31469185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 43398844 - 43398947
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    ||||| |||| ||||||| ||||| ||||||||||||| || |||||||||||||||| |||||||||| ||||||| ||  ||||||| ||| |||||     
T  43398844 aaaatgtaagtaaaaatgggtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaacttttgttaacaaatttttgtttagattttg 43398943  T
Q  255 ggac 258  Q
    ||||    
T  43398944 ggac 43398947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 43042274 - 43042172
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    ||||||||| ||||||||||||||| |||| |||||||||||  |  || |||||||||||| |||||||||| ||||||||| | |||||| |||| ||    
T  43042274 tcccaaaatgtaagcaaaaatgagtaaacaaaagttgatgtatctgatataaattttgaaccgaatacattaaattttgttgatcgatttttacttacat 43042175  T
Q  251 ttt 253  Q
    |||    
T  43042174 ttt 43042172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 24037682 - 24037574
Alignment:
Q  161 taagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacgg 260  Q
    |||||||||||| ||| ||||||||||||||| || || |||| |||| ||| |||| || || || |||||||  ||||||||||| ||||||||||||    
T  24037682 taagcaaaaatgggtcgacataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacattttaggacgg 24037583  T
Q  261 atgaagtac 269  Q
    ||| |||||    
T  24037582 atggagtac 24037574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 41374533 - 41374633
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattt 252  Q
    ||||||| ||||||||||||||| |||| ||||||||||| || ||| ||| |||||| | |||||||||| ||| ||||||  |||||| |||||||||    
T  41374533 ccaaaatgtaagcaaaaatgagtgaacacaagttgatgtatttggtataaactttgaatcaaatacattaactttcgttgactaatttttacttatattt 41374632  T
Q  253 t 253  Q
    |    
T  41374633 t 41374633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 29291065 - 29291176
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    ||||||| || |||| |||||||| ||||||||| ||||||||  ||||| |  ||||||||| |||| ||||| |||| |||||| ||||||||||| |    
T  29291065 gtcccaatatgtaagaaaaaatgaatcaacataaattgatgtatctagtaaattttttgaaccaaatatattaacttttattgaccaatttttgcttaca 29291164  T
Q  250 ttttaggacgga 261  Q
    |||| |||||||    
T  29291165 ttttgggacgga 29291176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 11386414 - 11386306
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgct--tatatt 251  Q
    |||||||||||||||| |   |||||||||||||||||| ||  |||||||||||||   |||| ||||||||||||||| | ||||||| |  ||||||    
T  11386414 caaaatataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatcaatttttgtttatatatt 11386315  T
Q  252 ttaggacgg 260  Q
    |||||||||    
T  11386314 ttaggacgg 11386306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 15660702 - 15660770
Alignment:
Q  200 caaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggatgaagta 268  Q
    ||||||||||| | ||||||||||||| |||||| | |||||||||||||||||||||| |||| ||||    
T  15660702 caaattttgaatcaaatacattaatttgtgttgatcaatttttgcttatattttaggactgatggagta 15660770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 17437174 - 17437238
Alignment:
Q  197 gtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacgga 261  Q
    |||||||||||||||  |||||||||||||||||||||  ||||||| ||||||||| |||||||    
T  17437174 gtacaaattttgaactaaatacattaatttttgttgacaaatttttgtttatattttgggacgga 17437238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 35311190 - 35311269
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgac 234  Q
    |||||| |||||||||||| ||||||||||||| || ||  | |||||||||||||||| |||||||||| ||||||||||    
T  35311190 caaaatgtaagcaaaaatgggtcaacataagtt-atatatcttgtacaaattttgaaccaaatacattaacttttgttgac 35311269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 33829450 - 33829389
Alignment:
Q  198 tacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacg 259  Q
    ||||||||||| ||| |||| ||||||||||||||||| ||||||| ||||||||| |||||    
T  33829450 tacaaattttgtaccaaatatattaatttttgttgaccaatttttgtttatattttgggacg 33829389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 4445866 - 4445926
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaac 211  Q
    ||||||||||||||||||||| ||| || |||| |||||||| || |||||||||||||||    
T  4445866 tcccaaaatataagcaaaaataagttaatataaattgatgtatttggtacaaattttgaac 4445926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 41099084 - 41099028
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttga 209  Q
    ||||||| |||||||||||| ||||||||||||| ||||| || |||||||||||||    
T  41099084 ccaaaatgtaagcaaaaatgggtcaacataagttaatgtatttggtacaaattttga 41099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 1862657 - 1862725
Alignment:
Q  149 tgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaataca 219  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||   |||||||||||| | ||||||    
T  1862657 tgtcccaaaatat--gcaaaaatgagtcaacataagttgatgtatttgacacaaattttgaatcaaataca 1862725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 13453686 - 13453593
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaa-tttttgttgacctatttttgctta 247  Q
    ||||||||||| ||||||| |||||||||| |||||| | |||| |||||||||||||  || | ||||| |||||||||| | |||||||||||    
T  13453686 caaaatataag-aaaaatgtgtcaacataaattgatgcatttagcacaaattttgaactaaagatattaattttttgttgatcaatttttgctta 13453593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 19924394 - 19924329
Alignment:
Q  169 aatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgac 234  Q
    |||| |||||| |||||||||||| || ||||||||||||||||  ||||||||| |||| |||||    
T  19924394 aatgggtcaacgtaagttgatgtatttggtacaaattttgaaccatatacattaacttttattgac 19924329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 25089917 - 25090017
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    ||||||||| |||| |||||||  | ||||||||||| |||| ||  ||||||||||||| | |||| || || ||||||| ||| ||||||||||||||    
T  25089917 tcccaaaatgtaagaaaaaatggattaacataagttgttgtatttgatacaaattttgaagcaaatatatgaagttttgtt-accaatttttgcttatat 25090015  T
Q  251 tt 252  Q
    ||    
T  25090016 tt 25090017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 35694023 - 35693934
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttg 243  Q
    |||||||||||| ||||||| ||| ||||  || ||||| ||  ||| |||||| |||| ||||||||||||||| |||||| |||||||    
T  35694023 caaaatataagcgaaaatgaatcatcatagattaatgtatttgatactaattttaaaccaaatacattaatttttattgaccaatttttg 35693934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 5713216 - 5713330
Alignment:
Q  140 tactttttctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatt 239  Q
    |||||| ||| || |||| |||||| |||||||  ||| | ||| |||||||| ||| |||||||||||||   ||||| |||||||| ||||||| | |    
T  5713216 tactttctctatctcaaagtataagtaaaaatggatcatcttaaattgatgtatttaatacaaattttgaattaaatacgttaattttggttgaccaaat 5713315  T
Q  240 tttgcttatatttta 254  Q
    |||  ||||||||||    
T  5713316 tttatttatatttta 5713330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 10459268 - 10459378
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    |||||||||||||||||||||  ||||||| ||||| ||||| || || |||| |||| | |  || ||| || || |||||||| || |||||||| ||    
T  10459268 tcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacat 10459367  T
Q  251 tttaggacgga 261  Q
    ||| |||||||    
T  10459368 tttgggacgga 10459378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 44726834 - 44726892
Alignment:
Q  201 aaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacg 259  Q
    ||||||| |||  |||||||||||||||||||| | |||||| |||||||||| |||||    
T  44726834 aaattttaaactaaatacattaatttttgttgatcaattttttcttatatttttggacg 44726892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 38935472 - 38935364
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||| ||||||||| ||||||| | |||||| ||||| ||||| || || |||| | || | | ||||||| || || |||||||  |||||||||||||    
T  38935472 gtccaaaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttata 38935373  T
Q  250 ttttaggac 258  Q
    |||| ||||    
T  38935372 ttttgggac 38935364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 3739815 - 3739926
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    ||||||||||||||||||||||  ||||||  ||||| ||||| || ||||||||||| |||| |||||||||| ||||||||||| |||||||||||||    
T  3739815 gtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 3739914  T
Q  250 ttttaggacgga 261  Q
    ||||||||||||    
T  3739915 ttttaggacgga 3739926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 3693991 - 3694109
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattt 252  Q
    ||||||| |||| | |||||||||||||||| |||||||| ||| ||||||||||||| | |||||||||||||||||||||| |||| | |||||||||    
T  3693991 ccaaaatgtaagtagaaatgagtcaacataaattgatgtatttaatacaaattttgaatcaaatacattaatttttgttgaccaatttctacttatattt 3694090  T
Q  253 taggacggatgaagtactt 271  Q
    | |  |||| |||||||||    
T  3694091 tggagcggaggaagtactt 3694109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 19758271 - 19758383
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtc-aacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttat 248  Q
    |||||||||| |||||||||||||||  ||| |||||||||||| || ||||||||| | |||  |||||||||| ||||||||||| |||||| |||||    
T  19758271 gtcccaaaatgtaagcaaaaatgagtataacgtaagttgatgtatttggtacaaattataaactaaatacattaacttttgttgaccaatttttacttat 19758370  T
Q  249 attttaggacgga 261  Q
    |||||| ||||||    
T  19758371 attttatgacgga 19758383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 37918915 - 37919027
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||  || ||||||| |||| |||||||| | ||||||||||  ||||| |||||||    
T  37918915 gtcccaaaatgtaagcaaaaatgaatcaacataagttgatgtatttgatataaattttaaaccaaatacattcacttttgttgacaaattttcgcttata 37919014  T
Q  250 ttttaggacggat 262  Q
     |||| |||||||    
T  37919015 gtttaagacggat 37919027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 30693440 - 30693333
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||| |||| |||||||| |||||||||  ||||||| || |||||||||||||| | |||||||||||||||||||| | ||||||  |||||||||    
T  30693440 caaaatgtaagtaaaaatgaatcaacataatatgatgtatttggtacaaattttgaatcaaatacattaatttttgttgatcaatttttatttatatttt 30693341  T
Q  254 aggacgga 261  Q
     |||||||    
T  30693340 cggacgga 30693333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 5056314 - 5056403
Alignment:
Q  169 aatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggac 258  Q
    |||||||||||||||||||||||| ||  ||||||||||||| | ||||| ||||||||| |||||| ||||||| ||||||||| ||||    
T  5056314 aatgagtcaacataagttgatgtatttgatacaaattttgaatcaaatacgttaatttttattgaccaatttttgtttatattttgggac 5056403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 29855060 - 29855169
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    ||||||||||||||| ||||| | |||||| ||||||||||| || ||  ||| |||| ||  |||||||||| ||||||||| | ||||||||||||||    
T  29855060 tcccaaaatataagcgaaaattaatcaacaaaagttgatgtatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatat 29855159  T
Q  251 tttaggacgg 260  Q
    ||||||||||    
T  29855160 tttaggacgg 29855169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 31784847 - 31784748
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||  || ||||||||||||||  |||||||| |||| |||| ||| ||||||||||    
T  31784847 tctgtcccaaaatgtaagcaaaaatttgtcaacataagttgatgtatctaatacaaattttgaacaaaatacattcatttctgtt-accgatttttgctt 31784749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 47543708 - 47543604
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| ||||| |||||||   | | |||||||||||| || |||||||||||||||| ||| |||||||||||||||||| ||||||  |||||    
T  47543708 gtcccaaaatgtaagccaaaatgaaatagcgtaagttgatgtatttggtacaaattttgaaccaaattcattaatttttgttgaccaattttttattata 47543609  T
Q  250 tttta 254  Q
    |||||    
T  47543608 tttta 47543604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 3739923 - 3739812
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||| |||||||||||||||||  ||||||| ||||| ||||| || ||  ||| |||| ||| |||||||||| ||| ||||||| |||||||||||||    
T  3739923 gtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttata 3739824  T
Q  250 ttttaggacgga 261  Q
    |||| |||||||    
T  3739823 ttttgggacgga 3739812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 6061461 - 6061556
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgct 245  Q
    |||||||||| | ||||| |||||  ||||||||||| |||||  ||||||||||||| || | |||||||||||||||||||||| || ||||||    
T  6061461 gtcccaaaatgttagcaagaatgaaccaacataagttaatgtatctagtacaaattttaaaacaaatacattaatttttgttgaccaatatttgct 6061556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 29846639 - 29846737
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||||||| |||| || ||||||||||| |||| || | |||| |||||||||||| ||||||||||||| | ||||||  |||||| |||||||||    
T  29846639 aaaatataagtaaaattgggtcaacataagctgatatattcagtataaattttgaaccgaatacattaatttatattgaccattttttgtttatatttt 29846737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 26265783 - 26265854
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaat 224  Q
    ||||||| |||||||||||  || |||||||||||||||| |||||| |||||||||||| ||||| |||||    
T  26265783 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaat 26265854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 29855167 - 29855064
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||| |||||||||||||||||   |||||| ||||| ||||| || ||||||||||| |||| ||||||| || |||||||||   ||||| |||||||    
T  29855167 gtcctaaaatataagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttata 29855068  T
Q  250 tttt 253  Q
    ||||    
T  29855067 tttt 29855064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 24023975 - 24024043
Alignment:
Q  200 caaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggatgaagta 268  Q
    |||||||||||||  ||||||||| ||||||||| | ||||||  ||||||||||||||||||| ||||    
T  24023975 caaattttgaaccacatacattaacttttgttgatcaattttttgttatattttaggacggatggagta 24024043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 35310304 - 35310356
Alignment:
Q  201 aaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||||| || | |||||||||||||||||||||| |||||| ||||||||||    
T  35310304 aaattttaaatcaaatacattaatttttgttgaccaatttttacttatatttt 35310356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 5693575 - 5693676
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    ||||| |||| |||||||||||   ||||||||| |||||||  |||||||||||||| |||| ||| |||||   | | |||||| |||||| ||||||    
T  5693575 gtcccgaaatgtaagcaaaaatatatcaacataaattgatgtttttagtacaaattttaaaccaaatgcatta---tcttttgaccaatttttccttata 5693671  T
Q  250 tttta 254  Q
    |||||    
T  5693672 tttta 5693676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 27527707 - 27527777
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacatt 221  Q
    |||||||||||||  ||||||| || || |||||||||||||  | ||| |||||||||||| ||||||||    
T  27527707 tcccaaaatataaataaaaatgggtaaatataagttgatgtatctggtataaattttgaaccaaatacatt 27527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 15343326 - 15343239
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctattttt 242  Q
    |||||| |||| |||||||||| |||||||||||||||| ||| ||||| |||| || | |||  ||| | ||||||||||| ||||||    
T  15343326 caaaatttaagtaaaaatgagt-aacataagttgatgtatttaatacaattttttaatcaaatttattgacttttgttgaccaattttt 15343239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 12276926 - 12276818
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattt 252  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||| |||||||||| | |||||||||| ||||| ||||| || ||| |||||||||    
T  12276926 ccaaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgaccaatctttacttatattt 12276827  T
Q  253 taggacgga 261  Q
    |||||||||    
T  12276826 taggacgga 12276818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 30848592 - 30848711
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaatta--gtacaaattttgaacccaatacattaatttttgttgacctatttttgcttat 248  Q
    ||||||||| ||||||||||||  ||||||||||||||||||  ||  |||||||||||||||  |||||||||||||||||||||| |||||||||||     
T  30848592 tcccaaaatgtaagcaaaaatggatcaacataagttgatgtatctaatgtacaaattttgaacaaaatacattaatttttgttgaccaatttttgcttac 30848691  T
Q  249 attttaggacggatgaagta 268  Q
    ||||||| ||||||| ||||    
T  30848692 attttagaacggatggagta 30848711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 54235227 - 54235325
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattt 252  Q
    |||||| |||||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||||||| ||||||||| | ||||||| ||||||||    
T  54235227 caaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 4423261 - 4423155
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    ||||||||||||| ||||||||||||  |||| ||||||||||||| || |||||||||||||| | |||| |||||||||| |||| | |||||  |||    
T  4423261 tctgtcccaaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaatcaaatatattaatttttattgatcaattttcactt 4423162  T
Q  247 atatttt 253  Q
    |||||||    
T  4423161 atatttt 4423155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 5496857 - 5496926
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaat 224  Q
    ||||| ||| |||||||||||||| |||||||||| || || |||||||||||||||| |||||||||||    
T  5496857 aaaatgtaaacaaaaatgagtcaatataagttgatttatttggtacaaattttgaaccaaatacattaat 5496926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 24980631 - 24980729
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||| |||| |||||||  ||||||||||||||||||  |   |||||||||| ||  |||||||||||||||||||||  ||||||||||| |||||    
T  24980631 aaaatgtaagtaaaaatggatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaatttttgcttacatttt 24980729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 54009985 - 54010085
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    ||||||||||||||||||||||  ||||||||||| || | || || ||| |||||||||| | |||||||||| ||||||| |   |||||||||||||    
T  54009985 gtcccaaaatataagcaaaaattggtcaacataag-tgttctatttggtataaattttgaatcaaatacattaagttttgtttataaatttttgcttata 54010083  T
Q  250 tt 251  Q
    ||    
T  54010084 tt 54010085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 18995137 - 18995235
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattt 252  Q
    ||||||||||||||||||  |||||| |||||||||||||  | |||||||||||||||| |||||||||| |||| || ||  || |||||||| ||||    
T  18995137 ccaaaatataagcaaaaagtagtcaa-ataagttgatgtatct-gtacaaattttgaaccaaatacattaacttttattaactaatgtttgcttacattt 18995234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 55827290 - 55827360
Alignment:
Q  198 tacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggatgaagta 268  Q
    |||||| ||| |||| |||| ||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||    
T  55827290 tacaaaattttaaccaaatatattaacttttgttgaccaatttttgcttatattttgggacgaatggagta 55827360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 48514541 - 48514637
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatt 251  Q
    ||||||||||| ||||||| || |||| |||| ||||| |||| || || ||||| ||| |||||||||| ||||||||||  ||||||| |||||||    
T  48514541 caaaatataagtaaaaatgggttaacacaagtagatgt-attaataaaatttttggaccaaatacattaacttttgttgactaatttttgtttatatt 48514637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 33759429 - 33759487
Alignment:
Q  200 caaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacg 259  Q
    ||||||||||||  |||||||||||||||||||||| | |||| |||||||||| |||||    
T  33759429 caaattttgaactaaatacattaatttttgttgacc-aattttacttatattttgggacg 33759487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 55762913 - 55762976
Alignment:
Q  198 tacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacgga 261  Q
    |||||||||| || | |||| ||||| ||||||||||| ||||||| ||||||||| |||||||    
T  55762913 tacaaatttttaatcaaatatattaacttttgttgaccaatttttgtttatattttgggacgga 55762976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 51495094 - 51495064
Alignment:
Q  238 tttttgcttatattttaggacggatgaagta 268  Q
    |||||||||||||||||||||||||||||||    
T  51495094 tttttgcttatattttaggacggatgaagta 51495064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 55617081 - 55617015
Alignment:
Q  188 atgtaattagtacaaattttgaacccaatacattaatttt-tgttgacctatttttgcttatatttt 253  Q
    ||||| |||||| ||| |||| ||  |||||||||||||| |||| |||||||||||||||||||||    
T  55617081 atgtatttagtataaaatttgtactaaatacattaattttatgttaacctatttttgcttatatttt 55617015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 55624385 - 55624319
Alignment:
Q  188 atgtaattagtacaaattttgaacccaatacattaatttt-tgttgacctatttttgcttatatttt 253  Q
    ||||| |||||| ||| |||| ||  |||||||||||||| |||| |||||||||||||||||||||    
T  55624385 atgtatttagtataaaatttgtactaaatacattaattttatgttaacctatttttgcttatatttt 55624319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 3249743 - 3249690
Alignment:
Q  201 aaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    |||||||||||| |||||||||| |||||| |||| |||||| |||||| ||||    
T  3249743 aaattttgaaccaaatacattaacttttgtcgaccaatttttacttataattta 3249690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 40391306 - 40391257
Alignment:
Q  209 aacccaatacattaatttttgttgacctatttttgcttatattttaggac 258  Q
    |||| |||||||||||||||||||| | |||||| |||||||||| ||||    
T  40391306 aaccaaatacattaatttttgttgatcgatttttacttatattttgggac 40391257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 2871606 - 2871550
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaatttt 207  Q
    |||||||||||||||||||||  || |||| ||||||||||| || ||| |||||||    
T  2871606 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttt 2871550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 31323926 - 31323820
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||  | |||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  31323926 tctgtcccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgctt 31323827  T
Q  247 atatttt 253  Q
    | |||||    
T  31323826 acatttt 31323820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 35003863 - 35003757
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    ||||| ||||||||||||| ||||||||||||||| || || |||||||||||||| | ||||||||||||||| || ||| |||||| |||||||||||    
T  35003863 aaaatgtaagcaaaaatgaatcaacataagttgatatattttgtacaaattttgaatcaaatacattaatttttattaaccaatttttacttatatttta 35003764  T
Q  255 ggacgga 261  Q
    |||||||    
T  35003763 ggacgga 35003757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 30531287 - 30531184
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| ||||||||||||| |||||||||||||||||| || ||||||| |||||||| ||||||| || || ||||||||  |||||||||| |    
T  30531287 gtcccaaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaatacatcaacttatgttgacccgtttttgcttaca 30531188  T
Q  250 tttt 253  Q
    ||||    
T  30531187 tttt 30531184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 2282507 - 2282415
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctattttt 242  Q
    ||||||| |||||||||||||| ||| ||||||| |||||||| ||  ||||| ||||||||  |||||||||| ||||||||||| ||||||    
T  2282507 gtcccaatatataagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaattttt 2282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 9829977 - 9829898
Alignment:
Q  173 agtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattt 252  Q
    ||||||||||| |||||||| || ||||||||||| |||  |||||||||||||||||||||  |||||| |||||||||    
T  9829977 agtcaacataaattgatgtatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 9829898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 152 - 261
Target Start/End: Original strand, 30531181 - 30531290
Alignment:
Q  152 cccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatt 251  Q
    |||||||| |||||||||| | ||||||||||||||||||| || || |||| |||| ||| ||||||| || || ||||||   ||||||||||| |||    
T  30531181 cccaaaatgtaagcaaaaacgggtcaacataagttgatgtatttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacatt 30531280  T
Q  252 ttaggacgga 261  Q
    || |||||||    
T  30531281 ttgggacgga 30531290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 31323812 - 31323923
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    |||| |||||||| |||||||||||  ||||||| ||||| ||||| || || |||| |||| |||  |||||| || || |||||||||||||||||||    
T  31323812 tctgacccaaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgctt 31323911  T
Q  247 atattttaggac 258  Q
    | ||||| ||||    
T  31323912 acattttgggac 31323923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 1986297 - 1986203
Alignment:
Q  166 aaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacgg 260  Q
    |||||| |||||||||||||| || || || ||| ||||||| |||  ||| ||||||||||| |||||| | |||| |||||||||||||||||    
T  1986297 aaaaatcagtcaacataagttaatatatttggtataaattttaaactaaatgcattaatttttattgaccaacttttacttatattttaggacgg 1986203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 14446805 - 14446697
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| |||| ||||||  |||||  ||||||||||||  || || |||||||||||   ||||||||| ||||||||||| | ||||||||| |    
T  14446805 gtcccaaaatgtaagtaaaaattggtcaatgtaagttgatgtatctaatataaattttgaacaacatacattaacttttgttgaccaacttttgcttaca 14446706  T
Q  250 ttttaggac 258  Q
    |||| ||||    
T  14446705 ttttgggac 14446697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 7343245 - 7343353
Alignment:
Q  153 ccaaaatataagcaaaaa--tgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    |||||||||||||||| |  | |||||||||||||| ||||| || |||||| |||||||   |||| ||||| ||||||||| | |||||| |||||||    
T  7343245 ccaaaatataagcaaatacataagtcaacataagtt-atgtatttggtacaa-ttttgaaataaatatattaacttttgttgatcaatttttacttatat 7343342  T
Q  251 tttaggacgga 261  Q
    |||||||||||    
T  7343343 tttaggacgga 7343353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 269
Target Start/End: Complemental strand, 33822393 - 33822278
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||| |||| |||||||  | || ||||||||||||| ||  ||||||||||||||  |||| ||||| ||||||| | | ||||||  ||| |||||    
T  33822393 caaaatgtaagtaaaaatggattaatataagttgatgtatttgatacaaattttgaactaaatatattaacttttgttaatcaatttttatttacatttt 33822294  T
Q  254 aggacggatgaagtac 269  Q
    |||||||||| |||||    
T  33822293 aggacggatggagtac 33822278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 8437813 - 8437887
Alignment:
Q  188 atgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggat 262  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||  | |||| ||||||||||  |||||||    
T  8437813 atgtatttggtacaaattttgaatcaaatacattaatttttgttgactaaattttacttatattttgagacggat 8437887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 24547189 - 24547283
Alignment:
Q  166 aaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacgg 260  Q
    |||||| ||||||||||| |||||||| ||  || ||||||| |||| | ||||||| || ||||||||| |||| || ||||||||| ||||||    
T  24547189 aaaaataagtcaacataaattgatgtatttgatataaattttaaaccaagtacattagttcttgttgaccgatttatggttatattttgggacgg 24547283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 249
Target Start/End: Complemental strand, 28004731 - 28004633
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    ||||||||||||||  ||||| |||||||| ||||| ||||| || |  |||| |||| ||| ||||||||||||||||||| || | || ||||||||    
T  28004731 tcccaaaatataagggaaaattagtcaacaaaagttaatgtatttggctcaaaatttgtaccaaatacattaatttttgttggccaaattatgcttata 28004633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 14222905 - 14222860
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgta 192  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||    
T  14222905 tctgttccaaaatgtaagcaaaaatgggtcaacataagttgatgta 14222860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 8211887 - 8211772
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    |||||||||| ||||||   ||||||||| || ||||| ||||||||||||| | ||| |||| ||||| |||| |||| | |||||||  | ||||| |    
T  8211887 aaaatataagtaaaaatagatcaacataaattaatgtatttagtacaaatttcggaccaaatatattaaattttattgatcaatttttgtatttatttga 8211788  T
Q  255 ggacggatgaagtactt 271  Q
     ||||||||||||||||    
T  8211787 -gacggatgaagtactt 8211772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 1937749 - 1937651
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||| ||||||||||||| | || ||||||||||| | |||||| ||||||| || | |||| || ||||||||| |||| |||| |  |||||||||    
T  1937749 aaaatgtaagcaaaaatgaattaatataagttgatgaatttagtataaattttaaatcaaatatataaatttttgtcgaccaatttatatttatatttt 1937651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 8830929 - 8830875
Alignment:
Q  214 aatacattaatttttgttgacctatttttgcttatattttaggacggatgaagta 268  Q
    |||||||||| ||||||||||| ||||||| |||  ||||| |||||||||||||    
T  8830929 aatacattaacttttgttgaccaatttttgtttactttttacgacggatgaagta 8830875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 28596131 - 28596081
Alignment:
Q  203 attttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||||||| |||| ||||||||||||||||| |||||| |||| |||||    
T  28596131 attttgaaccaaatatattaatttttgttgaccaatttttacttacatttt 28596081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 28004662 - 28004727
Alignment:
Q  188 atgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||| || ||||||||||||| || |||||||||| ||||||||||  |||||  ||||||||||    
T  28004662 atgtatttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatatttt 28004727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 31522613 - 31522717
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||| ||||||||||| ||| || ||||   ||||||  | |||||||||||||| | ||| |||||| ||||||||||| | ||||||||| |||||    
T  31522613 caaaatgtaagcaaaaataagttaatataaaacgatgtatctggtacaaattttgaatcaaatgcattaacttttgttgacc-aattttgcttacatttt 31522711  T
Q  254 aggacg 259  Q
     |||||    
T  31522712 gggacg 31522717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 8211848 - 8211896
Alignment:
Q  214 aatacattaatttttgttgacctatttttgcttatattttaggacggat 262  Q
    ||||||||||||| |||||| |||||||| |||||||||| | ||||||    
T  8211848 aatacattaatttatgttgatctatttttacttatatttttgaacggat 8211896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 26914448 - 26914553
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    ||||||||||||| |||||||||||| | |||| |||||||||||| |||||| ||||||||||||  ||||||||||||||||||| | ||||||||||    
T  26914448 tctgtcccaaaatgtaagcaaaaatg-gacaacttaagttgatgtatttagtataaattttgaaccacatacattaatttttgttgatcaatttttgctt 26914546  T
Q  247 atatttt 253  Q
    | |||||    
T  26914547 acatttt 26914553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 47783184 - 47783084
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattt 252  Q
    ||||||||||||||||||||||||||||||||  ||||||  |  ||||||||||||||| |||||||||| |||| |||||| |||||| |||| ||||    
T  47783184 ccaaaatataagcaaaaatgagtcaacataagccgatgtatctgatacaaattttgaaccaaatacattaactttttttgaccaatttttacttacattt 47783085  T
Q  253 t 253  Q
    |    
T  47783084 t 47783084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 32221471 - 32221574
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| |||||||||||   ||| ||||| |||||||| || |||||||||||||||| |||||||||| ||||||||||  ||||||||||| |    
T  32221471 gtcccaaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttaca 32221570  T
Q  250 tttt 253  Q
    ||||    
T  32221571 tttt 32221574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 32221575 - 32221461
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||| ||||||||||| |||||||| ||||| ||||| || || |||| |||| ||| ||||||| ||||| || ||| | ||||||||||| |||||    
T  32221575 caaaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacatttt 32221476  T
Q  254 aggacggatgaagta 268  Q
     ||||||||||||||    
T  32221475 gggacggatgaagta 32221461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 31280263 - 31280159
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    ||||||||  |||| |||||||  ||||||||| || |||||  | |||||||||||||||| |||||||||| ||||||||| | |||||| |||||||    
T  31280263 tcccaaaaggtaaggaaaaatggatcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaatttttacttatat 31280164  T
Q  251 tttag 255  Q
    |||||    
T  31280163 tttag 31280159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 26104322 - 26104214
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    ||||| ||||||||||||||||||||||| ||||| |  ||  ||||||||||||||  ||||||||| |||||||| ||| ||||||  ||| |||||     
T  26104322 aaaatgtaagcaaaaatgagtcaacataaattgatttgtttgatacaaattttgaactaaatacattagtttttgttaaccaatttttatttacattttg 26104223  T
Q  255 ggacggatg 263  Q
    | |||||||    
T  26104222 gaacggatg 26104214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 5307446 - 5307341
Alignment:
Q  140 tactttttctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatt 239  Q
    |||| ||||||| ||||||| ||| ||||||||  || ||||| |||||||||  || |||||||||| |||  ||| ||||||||||| |||||| |||    
T  5307446 tactctttctgttccaaaatgtaaacaaaaatggatctacatacgttgatgtatctaatacaaattttaaacgaaatccattaatttttattgaccaatt 5307347  T
Q  240 tttgct 245  Q
    ||||||    
T  5307346 tttgct 5307341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 30807036 - 30806939
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatt 251  Q
    ||||||||||||||||||| |||||||||||||| |||      ||||||||||| ||| | ||||||||||||| |||| | |||||| ||||||||    
T  30807036 caaaatataagcaaaaatgggtcaacataagttggtgtgtgcgatacaaattttggaccaagtacattaatttttattgatcaattttttcttatatt 30806939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 45610548 - 45610451
Alignment:
Q  145 tttctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctattttt 242  Q
    |||| ||| |||||| ||| ||||| | ||| |||||||||||||| | ||  || |||| ||||||| |||||||||||||| ||||||||||||||    
T  45610548 tttccgtctcaaaatgtaaacaaaatttagttaacataagttgatgaatttgatataaatcttgaaccaaatacattaattttagttgacctattttt 45610451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 46829107 - 46829152
Alignment:
Q  214 aatacattaatttttgttgacctatttttgcttatattttaggacg 259  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||    
T  46829107 aatacattaacttttgttgaccaatttttgcttatattttaggacg 46829152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 46733121 - 46733045
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgtt 231  Q
    ||||| ||||||||||| ||||||| |||| ||||| | ||  ||||||||||||| | ||||||||||||||||||    
T  46733121 aaaatgtaagcaaaaataagtcaacgtaagctgatgcatttgatacaaattttgaatcaaatacattaatttttgtt 46733045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 11256630 - 11256559
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatt 225  Q
    |||||||||||||||||||| | |||||| ||||||||| ||  ||||||||||| | | ||||||||||||    
T  11256630 caaaatataagcaaaaatgaattaacatatgttgatgtatttgatacaaattttggatcaaatacattaatt 11256559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 268
Target Start/End: Complemental strand, 29637539 - 29637424
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattt 252  Q
    |||||||||||| | |||| ||||||||||| ||   ||| || || |||| |||| | | |||| |||||||| ||||||| ||||||| |||| ||||    
T  29637539 ccaaaatataagtagaaattagtcaacataaattacagtatttggttcaaaatttgtatcaaatatattaatttatgttgacttattttttcttacattt 29637440  T
Q  253 taggacggatgaagta 268  Q
    || |||||||||||||    
T  29637439 taagacggatgaagta 29637424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 46829094 - 46829047
Alignment:
Q  214 aatacattaatttttgttgacctatttttgcttatattttaggacgga 261  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||||    
T  46829094 aatacattgacttttgttgaccaatttttgcttatattttaggacgga 46829047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 40905860 - 40905806
Alignment:
Q  201 aaattttgaacccaatacattaatttttgttgacctatttttgcttatattttag 255  Q
    |||||||||||| |||| ||||| ||||||||||| ||||||||||| |||||||    
T  40905860 aaattttgaaccaaataaattaacttttgttgaccaatttttgcttacattttag 40905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 37331031 - 37330963
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaa 223  Q
    ||||| |||||||||||| || ||||||| |||| |||  ||||||||||||||||||  |||||||||    
T  37331031 aaaatgtaagcaaaaatgggttaacataaattgacgtatctagtacaaattttgaaccatatacattaa 37330963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 15282640 - 15282718
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaattttt 228  Q
    |||||||||||||| ||||||||  |||||||||||||||| |  |  |||||||||| || | |||||||||| ||||    
T  15282640 gtcccaaaatataaacaaaaatggatcaacataagttgatgaatctgatacaaattttaaatcaaatacattaactttt 15282718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 29637439 - 29637537
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||| |||| |||||| ||||||||||| || || || ||  ||||||||||||||| |||||  |||||| |||||||  |||| | ||||||||||    
T  29637439 aaaatgtaagaaaaaataagtcaacataaattaatatatttgatacaaattttgaaccaaatactgtaatttatgttgactaatttctacttatatttt 29637537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 32729508 - 32729560
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaatttt 207  Q
    ||||||||||||||||| ||| ||||||| ||||| || ||| ||||||||||    
T  32729508 aaaatataagcaaaaataagttaacataaattgatctatttaatacaaatttt 32729560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 43575868 - 43575836
Alignment:
Q  238 tttttgcttatattttaggacggatgaagtact 270  Q
    |||||||||||||||||||||||||| ||||||    
T  43575868 tttttgcttatattttaggacggatggagtact 43575836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 18731991 - 18732101
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||||||||||||||||  ||||||||| ||||||||  | ||| |||||||||||| |||||||||| |||| |||||| |||||| |||| |    
T  18731991 gtcccaaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaattttt-cttaca 18732089  T
Q  250 ttttaggacgga 261  Q
    ||||||||||||    
T  18732090 ttttaggacgga 18732101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 23971191 - 23971290
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    ||||||||||||||||| | |||| ||||||||||||| || |||||||||||||||  |||| ||| ||||||||||||| |||||| |||||||||||    
T  23971191 aaaatataagcaaaaataaatcaatataagttgatgtatttggtacaaattttgaactaaatatatttatttttgttgaccaattttt-cttatatttta 23971289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 47968006 - 47967910
Alignment:
Q  166 aaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggat 262  Q
    |||||||| |||||||||||| ||||| |||||||||||||| |||  ||||||| |||||||||||||| | ||||| ||||||||| ||||||||    
T  47968006 aaaaatgaatcaacataagttaatgtatttagtacaaattttaaactaaatacataaatttttgttgaccgaattttgtttatattttgggacggat 47967910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 14773576 - 14773470
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaa-tttttgttgacctatttttgcttatattt 252  Q
    ||||||||||| |||||||||||||| ||||||||||||  |  || ||||||||||||  ||||||||| |||||||| ||| |||||| |||| ||||    
T  14773576 caaaatataagtaaaaatgagtcaacgtaagttgatgtatctgatataaattttgaaccacatacattaactttttgttcaccaatttttacttacattt 14773477  T
Q  253 taggacg 259  Q
    |||||||    
T  14773476 taggacg 14773470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 15224028 - 15223922
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaa-tttttgttgacctatttttgcttatattt 252  Q
    ||||||||||| |||||||||||||| ||||||||||||  |  || ||||||||||||  ||||||||| |||||||| ||| |||||| |||| ||||    
T  15224028 caaaatataagtaaaaatgagtcaacgtaagttgatgtatctgatataaattttgaaccacatacattaactttttgttcaccaatttttacttacattt 15223929  T
Q  253 taggacg 259  Q
    |||||||    
T  15223928 taggacg 15223922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 16866403 - 16866501
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||||||||||||||   |||| | ||||| ||||| |  ||||||||||| |||| |||||||||| ||||||||||| |||||||||||||    
T  16866403 tcccaaaatataagcaaaaattgatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 6803404 - 6803308
Alignment:
Q  162 aagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggac 258  Q
    ||||||||| ||||||||| ||||||  ||| || ||||||||||| |||  |||||||||| ||||||||||| | ||||||||||||||| ||||    
T  6803404 aagcaaaaacgagtcaacacaagttggcgtatttggtacaaattttaaactaaatacattaacttttgttgaccaaattttgcttatattttgggac 6803308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 44816572 - 44816473
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||| ||||||||||||| | || ||||  ||||||| || |||||||||||||||| |||||||||| |||||||| || ||||||| ||| |||||    
T  44816572 caaaatgtaagcaaaaatgaattaatataaactgatgtatttggtacaaattttgaaccaaatacattaacttttgttggccaatttttgtttacatttt 44816473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 5026242 - 5026141
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||||||||| ||||| ||||||   |||||||||||| || |||||||||||| ||  |||| ||||| ||||||| ||| |||||||||||||||||    
T  5026242 caaaatataagtaaaaacgagtca---taagttgatgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatatttt 5026146  T
Q  254 aggac 258  Q
     ||||    
T  5026145 gggac 5026141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 4259313 - 4259408
Alignment:
Q  156 aaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgtt-gacctatttttgcttatatt 251  Q
    ||||||| || |||||||||||||||||||| ||||| ||| || |||||||||| | |||||||||| ||||||| || | |||||||||||||||    
T  4259313 aaatatacgcgaaaatgagtcaacataagttaatgtatttactataaattttgaa-caaatacattaacttttgttagatcaatttttgcttatatt 4259408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 32652411 - 32652490
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttga 233  Q
    |||||| |||| |||||| ||||||||||| ||| |||| || ||||||| |||||||| ||||||||||||||| ||||    
T  32652411 caaaatgtaagtaaaaataagtcaacataaattggtgtatttggtacaaactttgaaccaaatacattaatttttattga 32652490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 3769757 - 3769834
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgt 230  Q
    |||||||  ||| ||||||||||||||| ||||||||||| ||| |||||||||| |||  |||||||||| ||||||    
T  3769757 ccaaaatgcaagtaaaaatgagtcaacacaagttgatgtatttaatacaaattttaaactaaatacattaacttttgt 3769834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 3719987 - 3719883
Alignment:
Q  149 tgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttat 248  Q
    |||| |||||| |||||||||||   ||||||||||||||||||  | ||| ||| |||||||| |||||| ||| ||| ||||||| |||||| | |||    
T  3719987 tgtctcaaaatgtaagcaaaaattgatcaacataagttgatgtatctcgtaaaaaatttgaaccaaatacactaactttagttgaccaatttttacatat 3719888  T
Q  249 atttt 253  Q
    |||||    
T  3719887 atttt 3719883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 30794546 - 30794443
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||| |||| |||| ||  ||||||||| |  ||||| || |||||||||||||| | |||| ||||| ||||||||||| | |||| ||||||||||    
T  30794546 caaaatgtaagtaaaattggatcaacataaatgaatgtatttggtacaaattttgaatcaaatatattaaattttgttgaccaaattttacttatatttt 30794447  T
Q  254 agga 257  Q
    ||||    
T  30794446 agga 30794443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 16866501 - 16866407
Alignment:
Q  159 tataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    |||||||||||||  ||||||| ||||| ||||| || ||  ||| |||| ||| |||||||||| |||| |||| | |||||||||||||||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatatttt 16866407  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 1554881 - 1554957
Alignment:
Q  195 tagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacggatgaagtactt 271  Q
    ||||||||||||| |||  ||||| | || |||| |||||| ||||||| ||||||||||||||||| | |||||||    
T  1554881 tagtacaaattttaaacaaaatacgtgaacttttattgaccaatttttgtttatattttaggacggagggagtactt 1554957  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 5026136 - 5026211
Alignment:
Q  145 tttctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacat 220  Q
    |||||||||||||||||||||||||||  || |||| ||||| || || ||||| |||| |||| ||| |||||||    
T  5026136 tttctgtcccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacat 5026211  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 6803305 - 6803419
Alignment:
Q  147 tctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgctt 246  Q
    ||||||||||||||||||||||| |  ||||||| ||||| ||||| |||||  ||| |||| ||| |||||   || || |||||||   |||||||||    
T  6803305 tctgtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaatacgccaacttgtgttgactcgtttttgctt 6803404  T
Q  247 atattttaggacgga 261  Q
      |||||||||||||    
T  6803405 gcattttaggacgga 6803419  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 34515855 - 34515917
Alignment:
Q  199 acaaattttgaacccaatacattaatttttgttgacctatttttgcttatattttaggacgga 261  Q
    |||||||||||||  |||||||||| |||| |||||| | ||||||||| || ||||||||||    
T  34515855 acaaattttgaacaaaatacattaacttttattgaccaaattttgcttacatgttaggacgga 34515917  T

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Target: scaffold0067 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 36049 - 35930
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||||| ||| |||||||||||||| |||| |||||||| ||  ||||||||||| ||| ||||||||||   ||||||| | ||||||  |||||    
T  36049 gtcccaaaatgtaaacaaaaatgagtcaatataaattgatgtatttgatacaaattttgtaccaaatacattaacggttgttgatcaatttttatttata 35950  T
Q  250 ttttaggacggatgaagtac 269  Q
    ||||| ||||||||||||||    
T  35949 ttttaagacggatgaagtac 35930  T

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Target: scaffold0034 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 95031 - 94952
Alignment:
Q  174 gtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||||||||||||||||| || |||||||||||||||  ||||||||||||||| |||| | ||||| ||||| |||||    
T  95031 gtcaacataagttgatgtatttggtacaaattttgaacataatacattaatttttattgatcaattttcgcttacatttt 94952  T

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Target: scaffold0027 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 13283 - 13180
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||| ||||| |||| ||||| |||| || |||||||||||||  | ||||||||||| |||| |||||||||| ||||||||| | ||||||||||| |    
T  13283 gtcctaaaatgtaagtaaaaacgagttaatataagttgatgtatcttgtacaaattttaaaccaaatacattaacttttgttgatccatttttgcttaca 13184  T
Q  250 tttt 253  Q
    ||||    
T  13183 tttt 13180  T

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Target: scaffold0072 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 20368 - 20467
Alignment:
Q  155 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttta 254  Q
    ||||| |||| ||||||  |||||||||| || ||||| ||| |||||||||| ||||  |||| |||||||||  ||||| ||||||||||| ||||||    
T  20368 aaaatgtaagtaaaaatatgtcaacataaattaatgtatttaatacaaattttaaaccacatacgttaatttttactgaccaatttttgcttacatttta 20467  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 51225 - 51300
Alignment:
Q  153 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaattttt 228  Q
    ||||||| |||||||||    ||||||||||||||||||| || ||| |||||||||||  |||||||||||||||    
T  51225 ccaaaatttaagcaaaagattgtcaacataagttgatgtatttggtataaattttgaactaaatacattaattttt 51300  T

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Target: scaffold2113 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 684 - 575
Alignment:
Q  151 tcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatat 250  Q
    ||||||||||||||  ||||| |||||||| |||||  |||| ||||| |||| |||| ||| |||| ||||| ||||||| ||| | |||||||||||     
T  684 tcccaaaatataagtgaaaattagtcaacaaaagttattgtatttagttcaaaatttgtaccaaataaattaacttttgtt-accaaattttgcttatac 586  T
Q  251 tttaggacgga 261  Q
    ||| |||||||    
T  585 tttgggacgga 575  T

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Target: scaffold2113; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 268
Target Start/End: Original strand, 578 - 695
Alignment:
Q  150 gtcccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttata 249  Q
    |||||||| ||||||||||| |  || |||| ||||| || || || |||||||||||||||  |||||| ||| ||||||||||  |||||  ||||||    
T  578 gtcccaaagtataagcaaaatttggt-aacaaaagttaatttatttggtacaaattttgaactaaatacaataacttttgttgactaattttcacttata 676  T
Q  250 ttttaggacggatgaagta 268  Q
    |||| ||| ||| ||||||    
T  677 ttttgggatggaagaagta 695  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 14638 - 14525
Alignment:
Q  154 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgaacccaatacattaatttttgttgacctatttttgcttatatttt 253  Q
    ||||||||||||||||||||||||||  | ||| ||||| ||| || ||||||| || | |||||||||| |||  ||||   ||||||| |||||| ||    
T  14638 caaaatataagcaaaaatgagtcaac-caggttcatgtatttaatataaattttaaatcaaatacattaactttgattgattaatttttgtttatatatt 14540  T
Q  254 aggacggatgaagta 268  Q
     |||||| |||||||    
T  14539 gggacggttgaagta 14525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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