View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_3 (Length: 720)
Name: NF19444_low_3
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 176 - 707
Target Start/End: Complemental strand, 31997460 - 31996930
Alignment:
| Q |
176 |
ctaagtgaaataaacagttcaatttaaagctaggaaataggattatcagtttcacttccaggtgtgcaccttctccaagagaagcatcctgtcaaaacca |
275 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31997460 |
ctaagtgaaataaacagttcaatttaaagctaggaaacatgattatcagtttcacttccaggtatgcaccttctccaagagaagcatcctgtcaaaacca |
31997361 |
T |
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| Q |
276 |
aaatgatccaagagaggtcttgatatttttaaagttctcccataacgaaaacataataacatgattcaagtattaactctctcttctaattcacataata |
375 |
Q |
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| T |
31997360 |
aaatgatcaaagagaggtcttgatatttttaaagttctcccataacgaaaacataataacatgattcaagtattaactctctcttctaattcacataata |
31997261 |
T |
|
| Q |
376 |
acattttcaacgatgaacatgcgagcaaatgaagcaatacaacaaattctaagtcgcaaaatgattaacaatacttgattagtagcaactgagcaccaag |
475 |
Q |
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| T |
31997260 |
acattttcaatcatgaacatgcgagcaaatgaagcaatacaacaaattctaagtcgcaaaatgattaacaatactcgattagtagcaactgagcaccaag |
31997161 |
T |
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| Q |
476 |
tctgtgtttgagggaagtttgcaaccatgttactgtctatatccacttacgatattgtataccgaataattgttgtgcatactgtaaggtctaaacttgc |
575 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31997160 |
tctgtgtttgagggaagtttgcaaccatgttactgtctatatccacttacgattttgtataccgaataattgctgtgcatactgtaaggtctaaacttgc |
31997061 |
T |
|
| Q |
576 |
cttaatcagaaaataactctagcacaagaaataacaacatatcaatatcagagagatttgagtaagtaagaaataatatacagaaaatagtttgcaaaaa |
675 |
Q |
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| T |
31997060 |
cttaatcagaaagtaa-tctagcaaaagaaataacaacatatcaatatcagagagatttgagtatgtaagaaataatatacagaaaatagtttgcaaaaa |
31996962 |
T |
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| Q |
676 |
atagtcattgtaaaacaatatagcttcaccct |
707 |
Q |
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| T |
31996961 |
atagtcattgtaaaacaatatagcttcaccct |
31996930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 31997616 - 31997525
Alignment:
| Q |
19 |
ggtgtcggagaccaattgagtaagaatgagaaatgatttggatgagatgcaattgagtggagaaagaaattaggagtctgaaaattatgaag |
110 |
Q |
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| T |
31997616 |
ggtgtcggagaccaattgagtaagaatgagaaataatttggatgagatgcaattgagtggagaaagaaattaggagtctgagaattatgaag |
31997525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 15843746 - 15843681
Alignment:
| Q |
298 |
atatttttaaagttctcccataacgaaaacataataacatgattcaagtattaactctctcttcta |
363 |
Q |
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||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||| || |||||| |
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| T |
15843746 |
atattttaaaagttctcccataatgaaaatataataacatgattcaagcattaactatcccttcta |
15843681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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