View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_30 (Length: 358)
Name: NF19444_low_30
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_30 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 344
Target Start/End: Original strand, 20029344 - 20029668
Alignment:
| Q |
21 |
tatgtttaaatgagctaaaacgtggggacactcaaatatatgttattactcgtttacacgtaagataataaggttatttcacgaagtcatgaattt-aat |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20029344 |
tatgtttaaatgagctaaaacgtggggacactcaaatatatgttattactcgtttacacgtaagataataaggttatttcacgaagtcatgaatttcaat |
20029443 |
T |
|
| Q |
120 |
ttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaaaccatggtgacattgttat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20029444 |
ttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaaaccatggtgacattgttat |
20029543 |
T |
|
| Q |
220 |
tttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgattatagtgatgactttgaaagatattcctaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20029544 |
tttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgattatagtgatgactttgaaagatattcctaac |
20029643 |
T |
|
| Q |
320 |
tatctatctatctagtgcgtctgtg |
344 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
20029644 |
tatctatctatctagtgcgtgtgtg |
20029668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 20513542 - 20513855
Alignment:
| Q |
17 |
tcactatgtttaaatgagctaaaacgtggggacactcaaatatatgttattactcgtttacacgtaagataataaggttatttcacgaagtcatgaattt |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20513542 |
tcactatgtttaaatgagctgaaacgtggggacactcaaatatatgttattactcgtttacacgtaatataataaggttatttcacgaagtcatgaattt |
20513641 |
T |
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| Q |
117 |
-aatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaaaccatggtgacattg |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20513642 |
caatttgacttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaaaccatggtgacaatg |
20513741 |
T |
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| Q |
216 |
ttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgattatagtgatgactttgaaagatattcc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20513742 |
ttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactgtaatattaaataagttgccttcgattatagtgatgactttgaaagatattcc |
20513841 |
T |
|
| Q |
316 |
taactatctatcta |
329 |
Q |
| |
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|||||||||||||| |
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| T |
20513842 |
taactatctatcta |
20513855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 34525 - 34838
Alignment:
| Q |
17 |
tcactatgtttaaatgagctaaaacgtggggacactcaaatatatgttattactcgtttacacgtaagataataaggttatttcacgaagtcatgaattt |
116 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34525 |
tcactatgtttaaatgagctgaaatgttgggacactcaaatatatgttattactcgtttacacgtaatataataaggttatttcacgaagtcatgaattt |
34624 |
T |
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| Q |
117 |
-aatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaaaccatggtgacattg |
215 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34625 |
caatttgacttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaaaccatggtgacaatg |
34724 |
T |
|
| Q |
216 |
ttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgattatagtgatgactttgaaagatattcc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34725 |
ttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagttgccttcgattatagtgatgactttgaaagatattcc |
34824 |
T |
|
| Q |
316 |
taactatctatcta |
329 |
Q |
| |
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|||||||||||||| |
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| T |
34825 |
taactatctatcta |
34838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 52615223 - 52615496
Alignment:
| Q |
17 |
tcactatgtttaaatgagctaaaacgtggggacactcaaatatatgttattactcgtttacacgtaagataataaggttatttcacgaagtcatgaattt |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
52615223 |
tcactatgtttaaatgagctgaaacgtggggacactcagatatatgttattactcgtttacgcgtaatataatcaggttatttcacgaagtcatgaattt |
52615322 |
T |
|
| Q |
117 |
-aatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaaaccatggtgacattg |
215 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |
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| T |
52615323 |
caatttgacttgatatgatttattttaatggaaattagtttagtgttttgtccactatgtttgacttcacggtaagtttgacgaaaccatggtgacatcg |
52615422 |
T |
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| Q |
216 |
ttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgatt |
289 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||| |||| |
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| T |
52615423 |
ttattttattgaaatttcaaagtttatcttttgtcaaaatcatcactacaatattaaataagttgccttagatt |
52615496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 15099772 - 15099729
Alignment:
| Q |
246 |
ttgtcaaaatcatcactataatattaaataagctgccttcgatt |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
15099772 |
ttgtcaaaatcatcactataatattaaataagttgccttagatt |
15099729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 23172686 - 23172414
Alignment:
| Q |
17 |
tcactatgtttaaatgagctaaaacgtggggacactcaaatatatgttattactcgtttacacgtaagataataaggttatttcacgaagtcatgaattt |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
23172686 |
tcactatgtttaaatgagcttaaacgtggggacactcagatatatgttattactcgtttacgcgtaatataatcaggttatttcacgaagtcatgaattt |
23172587 |
T |
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| Q |
117 |
-aatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaaaccatggtgacattg |
215 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||| | || ||||||||| ||||||||||||||| |||||||| | |
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| T |
23172586 |
caatttgacttgatatgatttattttaatggaaattagtttagtgttttgtccagtatgtatg-cttcacggtaagtttgacgaaaccaaggtgacatcg |
23172488 |
T |
|
| Q |
216 |
ttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgatt |
289 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||| |||| |
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| T |
23172487 |
ttattttattgaaatttcaaagtttatcttttgtcaaaatcatcaccacaatattaaataagttgccttagatt |
23172414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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