View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_31 (Length: 356)
Name: NF19444_low_31
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_31 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 111 - 356
Target Start/End: Complemental strand, 33503058 - 33502808
Alignment:
| Q |
111 |
atgcagttggaaatggctctttctgttacagcaattggatgttctaagagtaaagtggagtcaggtaaaaatgccgattcatcaaatttctcttctccat |
210 |
Q |
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| T |
33503058 |
atgcagatggaaatggctctttctgttacagcagttggatgttccaagagtaaagtggggtcgggtgaaaatactgattcatcaaattcttcctgtccgt |
33502959 |
T |
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| Q |
211 |
aaaaaagaata----gagttataggtgaagaatcttcaacctccccccaactaatttctacagcagttggatcaatgaaagtaggatctcctttgtattg |
306 |
Q |
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| T |
33502958 |
taaaaagaataaaaagagttatagttgaagaatcttcaacctccccccaactaatttctacagcagttggatctatgaaagtaggatctcctttgtattg |
33502859 |
T |
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| Q |
307 |
ggcagaagtatattgcagtgaagaaaa-ttgacaggaaagtaggtgtatat |
356 |
Q |
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| T |
33502858 |
ggcagaagtatattgcagtgaagaaaatttgacaggaaagtgggtgcatat |
33502808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 33503698 - 33503598
Alignment:
| Q |
12 |
gattatactctaacagtgatgttgcatgtaatgaaatgagtatgaaaaaggaaggataa-aatagtaataaagtaattaagttttgatcttcatagtgaa |
110 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||| | ||||||||||| | |||||| |||||||||| ||||| |
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| T |
33503698 |
gattatactctaacagtgacgttgcatgtaatgaaatgagtatgacaaaggatgaataatactagtaataaagcgaataagttgtgatcttcattgtgaa |
33503599 |
T |
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| Q |
111 |
a |
111 |
Q |
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| T |
33503598 |
a |
33503598 |
T |
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