View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_38 (Length: 308)
Name: NF19444_low_38
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 2142126 - 2142409
Alignment:
| Q |
20 |
aggatcatccaaccaaattctttgacttgcatgggaaaattttttgacaataaattctcttccatttgagagtgtaatcaaaggttggttcatattgttg |
119 |
Q |
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| T |
2142126 |
aggatcatccaaccaaattctttgacttgcatgggaaaattttttgacaataaattctcttccatttgagagtgtaatcaaaggttggttcatattgttg |
2142225 |
T |
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| Q |
120 |
caataaacttcaaatcctgggtacccacatcgatcactttga-nnnnnnnctcttaattggaaagggaactgnnnnnnngatcctgactctagggttccg |
218 |
Q |
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| T |
2142226 |
caataaacttcaaatcctgggtacccacatcgatcactttgattttttttctcttaattggaaagggaactgaaaaaaaaatcccgactctagggttccg |
2142325 |
T |
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| Q |
219 |
cagtatccctcagtacaaattggagctctgcttcttgttgagtaaaaaagcaagaggactatggaaaatatgaaacaaattttc |
302 |
Q |
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| T |
2142326 |
cagtatccctcagtacaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttc |
2142409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 2151706 - 2151802
Alignment:
| Q |
62 |
tttgacaataaattctcttccatttgagagtgtaatcaaaggttggttcatattgttgcaataaacttcaaatcctgggtacccacatcgatcactttga |
161 |
Q |
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| T |
2151706 |
tttgacaacaaattctcttccatttgagagtgtaatcaaaggttg---cttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttga |
2151802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 2146255 - 2146392
Alignment:
| Q |
21 |
ggatcatccaaccaaattctttgacttgcatgggaaaattttttgacaataaattctcttccatttgagagtgtaatcaaaggttggttcatattgttgc |
120 |
Q |
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| T |
2146255 |
ggatcatccatccatattctttggctctcataggatatatttttgataacatattcttttccatttgagagtgtaatcaaaggttg---cttatttttgc |
2146351 |
T |
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| Q |
121 |
aataaacttcaaatcctgggtacccacatcgatcactttga |
161 |
Q |
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| T |
2146352 |
aaacaacttcaaagcctgggtacacacatcgatcactttga |
2146392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 2146520 - 2146565
Alignment:
| Q |
247 |
tgcttcttgttgagtaaaaaagcaagaggactatggaaaatatgaa |
292 |
Q |
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| T |
2146520 |
tgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaa |
2146565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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