View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19444_low_39 (Length: 298)
Name: NF19444_low_39
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_39 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 43 - 280
Target Start/End: Complemental strand, 7804839 - 7804602
Alignment:
| Q |
43 |
tacttttctcaagataaatagatagatagactagtttttaggactcaataggtcattgtgnnnnnnnataagaaaattaaactaaaatgggtgcaattag |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7804839 |
tacttttctcaagataaatagatagatagactagtttttaggactcaataggtcattgtgtttttttataagaaaattaaactaaaatgggtgcaattag |
7804740 |
T |
|
| Q |
143 |
gggtttacagtgaaagggttatttgatccatatccgaccgtgtcaatttttagatccgaacccgatcaaaaatttaatcaaattcggtgaagtacaagtt |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7804739 |
gggtgtacagtgaaagggttatttgatccatatccgaccgtgtcaatttttagatccgaacccgatcaaaaatttaatcaaattcggtgaagtacaagtt |
7804640 |
T |
|
| Q |
243 |
caataaagacagaacaatactaagacaacactagattg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7804639 |
caataaagacagaacaatactaagacaacactagattg |
7804602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University