View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_4 (Length: 708)
Name: NF19444_low_4
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 4695652 - 4696018
Alignment:
| Q |
14 |
cataggaaaataaatattaaagtatatggtttgaggatttagaagagaaagggaggtgatgacttacccttttataataaatatattatataaccatgta |
113 |
Q |
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| T |
4695652 |
cataggaaaataaatattaaagtatatggtttgacgatttagaagagaaagggaggtgatgacttacccttttataata----tattatataaccatgta |
4695747 |
T |
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| Q |
114 |
caataaaataaatctataatgaagtgtaatggaaaagcggaacatgttcgtcttgatgctactctataaaatatatctatattagggttgtacaagggac |
213 |
Q |
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| T |
4695748 |
caataaaataaatctataatgaagtgtaatggaaaagcggaacatgtccgtcttgatgctactctataaa-tatatctatattaggattgtacaagggac |
4695846 |
T |
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| Q |
214 |
aaactagccatgttgtatatgacccgaacctggttctaacactagctcaagacaaattttagacatgaaatcgaccctaaactctgtcaaaattgatgag |
313 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4695847 |
gaactagctatgttgtatatgacccgaacctggttctaacactaactcaagacaaattttcgacatgaaatcgaccctaaactctgtcaaaattgatgag |
4695946 |
T |
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| Q |
314 |
gtccgtgtctgataaggatgagaaaataccaagacaaggtcaggttggtccaagccaaaatcaccggtacat |
385 |
Q |
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|| |||||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||| |
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| T |
4695947 |
gtacgtgtcagataaggatgagacaataccaagacaagatcaggttggtccaagtcaaaatcacctgtacat |
4696018 |
T |
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