View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_40 (Length: 293)
Name: NF19444_low_40
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 13009555 - 13009291
Alignment:
| Q |
20 |
aacagaatcaagcccttccattctaccacgaacaattctatgaaacacttctctaacttgtctttccaaaggatccaatccatctttcaaaccttcacaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13009555 |
aacagaatcaagcccttccattctaccacgaacaattctatgaaatacttctctaacttgtctttccaaaggatccaatccatctttcaaaccttcacaa |
13009456 |
T |
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| Q |
120 |
acattcaccacatcttcaacattaaccctaacttcctcttctttctcttcactcaaaggaaattccaaagaatcagccaattcattcatccccctagcac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13009455 |
acattcaccacatcttcaacattaaccctaacttcctcttctttctcttcactcaaaggaaattccaaagaatcagccaattcattcatccccctagcac |
13009356 |
T |
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| Q |
220 |
acttctcaatcttctgaatctccctcaaaagtccacaacaattctttctctccatattcttcgac |
284 |
Q |
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|||||||||||| |||||||||| |||||||||| ||||||||||| |||||| | ||||||||| |
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| T |
13009355 |
acttctcaatctcctgaatctccttcaaaagtccgcaacaattcttcctctccctcttcttcgac |
13009291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 12977153 - 12976892
Alignment:
| Q |
23 |
agaatcaagcccttccattctaccacgaacaattctatgaaacacttctctaacttgtctttccaaaggatccaatccatctttcaaaccttcacaaaca |
122 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||||| |
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| T |
12977153 |
agaatcaagcccttccattctaccatgaacaattctatgaaacacttctctgacttgtatttccaaaggatccaatccatctttaaaactttcacaaaca |
12977054 |
T |
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| Q |
123 |
ttcaccacatcttcaacattaaccctaacttcctcttctttctcttcactcaaaggaaattccaaagaatcagccaattcattcatccccctagcacact |
222 |
Q |
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| T |
12977053 |
atcaccacatcttcaactttaaccctaacttcctcttctttctcttcactcaaaggaaattccaaagaatcagccaattcattcatccccctagcacact |
12976954 |
T |
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| Q |
223 |
tctcaatcttctgaatctccctcaaaagtccacaacaattctttctctccatattcttcgac |
284 |
Q |
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||||||||| |||||||||| |||||||||| ||||||||||| |||||| | ||||||||| |
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| T |
12976953 |
tctcaatctcctgaatctccttcaaaagtccgcaacaattcttcctctccctcttcttcgac |
12976892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 284
Target Start/End: Complemental strand, 13031909 - 13031649
Alignment:
| Q |
24 |
gaatcaagcccttccattctaccacgaacaattctatgaaacacttctctaacttgtctttccaaaggatccaatccatctttcaaaccttcacaaacat |
123 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13031909 |
gaatcaagcccttccattctaccacaaacaattctatgaaacacttctctaacttgtctttccaaaggatccaatccatctttcaaaccttcacaaacct |
13031810 |
T |
|
| Q |
124 |
tcaccacatcttcaacattaaccctaacttcctcttctttctcttcactcaaaggaaattccaaagaatcagccaattcattcatccccctagcacactt |
223 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
13031809 |
tcaccacatcttcaactttaaccctaacttcctcttctttctcttcactcaaaggaaaccgcaaagaatcagccagttcattcatccccctagcacactt |
13031710 |
T |
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| Q |
224 |
ctcaatcttctgaatctccctcaaaagtccacaacaattctttctctccatattcttcgac |
284 |
Q |
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|||||||| | |||||||| |||||||||| |||||| |||| ||||| | ||||||||| |
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| T |
13031709 |
ctcaatctccagaatctccttcaaaagtccgcaacaactcttcatctccctcttcttcgac |
13031649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 284
Target Start/End: Complemental strand, 13013108 - 13012849
Alignment:
| Q |
25 |
aatcaagcccttccattctaccacgaacaattctatgaaacacttctctaacttgtctttccaaaggatccaatccatctttcaaaccttcacaaacatt |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||| |||||||||| | |
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| T |
13013108 |
aatcaagcccttccattctaccacgaacaattctatgaaacacttctctgacttgtattacgaaaggatccaatccatctttcaaactttcacaaacaat |
13013009 |
T |
|
| Q |
125 |
caccacatcttcaacattaaccctaacttcctcttctttctcttcactcaaaggaaattccaaagaatcagccaattcattcatccccctagcacacttc |
224 |
Q |
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|||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13013008 |
caccacatctgcaactttaaccctaagttcctcttctttctcttcactcaaaggaaattccacagaatcagccaattcattcatccccctagcacacttc |
13012909 |
T |
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| Q |
225 |
tcaatcttctgaatctccctcaaaagtccacaacaattctttctctccatattcttcgac |
284 |
Q |
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||||||| ||||||||||||||||||||| |||||| |||| ||||| | ||||||||| |
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| T |
13012908 |
tcaatctcctgaatctccctcaaaagtccgcaacaactcttcatctccctcttcttcgac |
13012849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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