View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_42 (Length: 268)
Name: NF19444_low_42
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 34660584 - 34660353
Alignment:
| Q |
16 |
attatctcagatgaatgatactttggaaaggaaaattcacctagacattgatggagaaaaatgaatgacaagaaaagtggtccactatgactaccattgc |
115 |
Q |
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| T |
34660584 |
attatctctgatgaatgaaacttcggagaagaaaattcacctagacattgatggagaaaaatgaatgacaagaaaagtggtccactatgactaccattac |
34660485 |
T |
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| Q |
116 |
agctgcacttagtccttatcactttctcatcaacatgtagttatcatgattttcagtcccaattcttccccaaccacaattgaatgaagttaggacccca |
215 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34660484 |
agctgcacttggtccttatcactttctca---acatgtagttatcatgattttcagtcccaattcttccccaaccacaattgaatgaagttaggacccca |
34660388 |
T |
|
| Q |
216 |
tgtgttgcaggtgcagaacctaaccatgagatcag |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34660387 |
tgtgttgcaggtgcagaacctaaccatgagatcag |
34660353 |
T |
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