View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_48 (Length: 250)
Name: NF19444_low_48
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_48 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: scaffold0089 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34903 - 35139
Alignment:
| Q |
1 |
ttcttacttatgtcagcacatatttgcagaattatagcatttgattataaaaatcaaataaaacaatttggctttcaagcacttgttttatcacaatccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34903 |
ttcttacttatgtcagcacatatttgcagaattatagcatttgattataaaaatcaaataaaacaatttggctttcaagcacttgttttatcacaatccc |
35002 |
T |
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| Q |
101 |
aattattgatattccaccaatggttgtaattatgcattatacaaaaggtagagaacaagtgcacaatacatggtaattgtgtgactcatccctagcaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35003 |
aattattgatattccaccaatggttgtaattatgcattatacaaaaggtagagaacaagtgcacaatacatggtaattgtgtgactcatccctagcaact |
35102 |
T |
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| Q |
201 |
acaagcgactcatcatctagatctttcctcttactct |
237 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
35103 |
acaagtgactcatcatctagatctttcctcttactct |
35139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 20513922 - 20514158
Alignment:
| Q |
1 |
ttcttacttatgtcagcacatatttgcagaattatagcatttgattataaaaatcaaataaaacaatttggctttcaagcacttgttttatcacaatccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20513922 |
ttcttacttatgtcagcacatatttgcagaattatagcatttgattataaaaatcaaataaaacaatttggctttcaagcacttgttttatcacaatccc |
20514021 |
T |
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| Q |
101 |
aattattgatattccaccaatggttgtaattatgcattatacaaaaggtagagaacaagtgcacaatacatggtaattgtgtgactcatccctagcaact |
200 |
Q |
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| T |
20514022 |
aattattgatattccaccaatggttgtaattatgcattatacaaaaggtagagaacaagtgcacaatacatggtaattgtgtgactcatccctagcaact |
20514121 |
T |
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| Q |
201 |
acaagcgactcatcatctagatctttcctcttactct |
237 |
Q |
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| T |
20514122 |
acaagtgactcatcatctagatctttcctcttactct |
20514158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 20029669 - 20029861
Alignment:
| Q |
45 |
ttataaaaatcaaataaaacaatttggctttcaagcacttgttttatcacaatcccaattattgatattccaccaatggttgtaattatgcattatacaa |
144 |
Q |
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| T |
20029669 |
ttataaaaatcaaataaaacaatttggctttcaagcacttgtttgatcacaatcccaattattgatattccaccaatggttgtaattatgcattatacaa |
20029768 |
T |
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| Q |
145 |
aaggtagagaacaagtgcacaatacatggtaattgtgtgactcatccctagcaactacaagcgactcatcatctagatctttcctcttactct |
237 |
Q |
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| T |
20029769 |
aaggtagagaacaagtgcacaatacatggtaattgtgtgactcatccctagcaactacaagcgactcatcatctagatctttcctcttactct |
20029861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 32665933 - 32666011
Alignment:
| Q |
159 |
gtgcacaatacatggtaattgtgtgactcatccctagcaactacaagcgactcatcatctagatctttcctcttactct |
237 |
Q |
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| T |
32665933 |
gtgcacaatacatggtaattgcgtgactcatccctagcaactacaagtgactcatcatctagatctttcctcttactct |
32666011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 17941706 - 17941628
Alignment:
| Q |
159 |
gtgcacaatacatggtaattgtgtgactcatccctagcaactacaagcgactcatcatctagatctttcctcttactct |
237 |
Q |
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| T |
17941706 |
gtgcacaatacatggtaattgcgtgactcatccttagcaactacaagtgactcatcatctagatctttcctcttactct |
17941628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 31109980 - 31109924
Alignment:
| Q |
159 |
gtgcacaatacatggtaattgtgtgactcatccctagcaactacaagcgactcatca |
215 |
Q |
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| T |
31109980 |
gtgcacaatacatggtaattgcatgactcatccctagcaactacaagtaactcatca |
31109924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 31115991 - 31116047
Alignment:
| Q |
159 |
gtgcacaatacatggtaattgtgtgactcatccctagcaactacaagcgactcatca |
215 |
Q |
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| T |
31115991 |
gtgcacaatacatggtaattgcatgactcatccctagcaactacaagtaactcatca |
31116047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 16078200 - 16078155
Alignment:
| Q |
170 |
atggtaattgtgtgactcatccctagcaactacaagcgactcatca |
215 |
Q |
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| T |
16078200 |
atggtaattgcatgactcatccctagcaactacaagtgactcatca |
16078155 |
T |
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