View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19444_low_5 (Length: 670)

Name: NF19444_low_5
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19444_low_5
NF19444_low_5
[»] chr6 (1 HSPs)
chr6 (1-657)||(35095121-35095777)


Alignment Details
Target: chr6 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Complemental strand, 35095777 - 35095121
Alignment:
Q  1 ccttaaatttaaaaactctcttcaaaacaccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggcgggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095777 ccttaaatttaaaaactctcttcaaaacaccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggcgggc 35095678  T
Q  101 gttctttgttacaaaggacatgtttggggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaaggatttaccgtatatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095677 gttctttgttacaaaggacatgtttggggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaaggatttaccgtatatca 35095578  T
Q  201 gaaccattagcttaatgaacaaccaattcgataccacatggccaggcctaaacaaactcaccggtcttaagaacatttacctttctaataataaattctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095577 gaaccattagcttaatgaacaaccaattcgataccacatggccaggcctaaacaaactcaccggtcttaagaacatttacctttctaataataaattctc 35095478  T
Q  301 tggcgagattccagcagaggcgtttcaagcgatgcagtggctgaagaaaatttatctcgacaataatcagttcactggtcctattccaacttcccttgct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095477 tggcgagattccagcagaggcgtttcaagcgatgcagtggctgaagaaaatttatctcgacaataatcagttcactggtcctattccaacttcccttgct 35095378  T
Q  401 tcattgccgaggttgatatcgttgcggttggatggaaacaaattcaccggtcctgttcctgaatttagagaaacgcttaaatcattcagcgtagcgaata 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095377 tcattgccgaggttgatatctttgcggttggatggaaacaaattcaccggtcctgttcctgaatttagagaaacgcttaaatcattcagcgtagcgaata 35095278  T
Q  501 atcaattagagggtgaaatacctgccaaccttagcaagattccagcttcatctttttctggtaagatatatatgtatatagactcatgaattcaaagaat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095277 atcaattagagggtgaaatacctgccaaccttagcaagattccagcttcatctttttctggtaagatatatatgtatatagactcatgaattcaaagaat 35095178  T
Q  601 aaatgtggatttcattcatcaaagaaagagataagctagtttagcaatgtatataat 657  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095177 aaatgtggatttcattcatcaaagaaagagataagctagtttagcaatgtatataat 35095121  T

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