View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_52 (Length: 237)
Name: NF19444_low_52
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15754301 - 15754521
Alignment:
| Q |
1 |
ccaagcctaaagccacctaaatgccatgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacatta |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15754301 |
ccaagcctaaagccacctaaatgtcatgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagttgtgttctatgttgcactctacatta |
15754400 |
T |
|
| Q |
101 |
tagcagtgggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15754401 |
tagcagtgggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcatt |
15754500 |
T |
|
| Q |
201 |
ctttaactggtggatgtcttg |
221 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
15754501 |
cttcaactggtggatgtcttg |
15754521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 15764985 - 15765202
Alignment:
| Q |
1 |
ccaagcctaaagccacctaaatgccatgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
15764985 |
ccaagcctaaagccacctaaatgccatgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagttgtgttctatactgcactctacattt |
15765084 |
T |
|
| Q |
101 |
tagcagtgggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcatt |
200 |
Q |
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| T |
15765085 |
tagcagtgggaacaggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcatt |
15765184 |
T |
|
| Q |
201 |
ctttaactggtggatgtc |
218 |
Q |
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||| || ||||||||||| |
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| T |
15765185 |
cttcaattggtggatgtc |
15765202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 15778650 - 15778867
Alignment:
| Q |
1 |
ccaagcctaaagccacctaaatgccatgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacatta |
100 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| ||||| || || |||||| |||||| | |||| ||||||||||||||| |||||||||| |
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| T |
15778650 |
ccaagcctaaagccacctgagtgccatgaaatggatgtgacaaagtgtaaagaagctaccacactacagctagttgtgttctatgttgccctctacatta |
15778749 |
T |
|
| Q |
101 |
tagcagtgggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcatt |
200 |
Q |
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||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||| | || ||||||||||||||| |
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| T |
15778750 |
tagcagtgggaacaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcatt |
15778849 |
T |
|
| Q |
201 |
ctttaactggtggatgtc |
218 |
Q |
| |
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||| || ||||||||||| |
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| T |
15778850 |
cttcaattggtggatgtc |
15778867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 15728545 - 15728761
Alignment:
| Q |
1 |
ccaagcctaaagccacctaaatgccatgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacatta |
100 |
Q |
| |
|
||||||||||| |||||| | || |||||||||||||| |||||||||||||||||||| ||| | |||| ||||||||||| ||||||||||||| |
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| T |
15728545 |
ccaagcctaaaaccacctgagtgtcatgaaatggatgtgacaaaatgcaaggaagcttctacattacagctagttgtgttctatggtgcactctacattc |
15728644 |
T |
|
| Q |
101 |
tagcagtgggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcatt |
200 |
Q |
| |
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||||||||||||||||||| || ||||| |||||||| || ||||||||||| || ||||| || |||||| | ||||| || || || |||||||| |
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| T |
15728645 |
tagcagtgggaacaggtggaacaaaacctaacatttccactattggtgctgatcaatttgatgagtttgacacaaaagagaagaaacacaaactctcatt |
15728744 |
T |
|
| Q |
201 |
ctttaactggtggatgt |
217 |
Q |
| |
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||| ||||||||||||| |
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| T |
15728745 |
cttcaactggtggatgt |
15728761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 15736319 - 15736535
Alignment:
| Q |
1 |
ccaagcctaaagccacctaaatgccatgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacatta |
100 |
Q |
| |
|
||||||||||| |||||| | || |||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||| | |
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| T |
15736319 |
ccaagcctaaaaccacctgagtgtcatgaaatggatgtgacaaaatgcaaggaagcttccacactacagctagttgtgttctatggtgcactctacactc |
15736418 |
T |
|
| Q |
101 |
tagcagtgggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcatt |
200 |
Q |
| |
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||||||||||||||||||| || || | |||||||| || ||||||||||| || ||||| || |||||| | ||||| || || ||| |||||||| |
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| T |
15736419 |
tagcagtgggaacaggtggaacaaaggctaacatttccactattggtgctgatcaatttgatgagtttgacacaaaagagaagaaacataaactctcatt |
15736518 |
T |
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| Q |
201 |
ctttaactggtggatgt |
217 |
Q |
| |
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||| || |||||||||| |
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| T |
15736519 |
cttcaattggtggatgt |
15736535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 33413217 - 33413008
Alignment:
| Q |
8 |
taaagccacctaaatgccatgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacattatagcagt |
107 |
Q |
| |
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||||||||||| ||||||||||| | ||||| ||||||||||| || || ||| | | ||||||||||||||| |||||| |||| | ||||| | |
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| T |
33413217 |
taaagccacctgaatgccatgaattagatgtaacaaaatgcaaaaaactctctacattacaattagctgtgttctatggtgcactttacactctagcaat |
33413118 |
T |
|
| Q |
108 |
gggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcattctttaac |
207 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||| | |||||||||||||||| ||| || ||||| || || |
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| T |
33413117 |
aggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatgattttcatcctaaagaaaaatcacataaactttcatttttcaat |
33413018 |
T |
|
| Q |
208 |
tggtggatgt |
217 |
Q |
| |
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|||||||||| |
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| T |
33413017 |
tggtggatgt |
33413008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 39239872 - 39239799
Alignment:
| Q |
112 |
acaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatc |
185 |
Q |
| |
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|||||||| ||||||||||||||||| || || || |||||||| ||||| || ||||| || ||||| ||||| |
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| T |
39239872 |
acaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatgactttgatcccaaagagaaatc |
39239799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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