View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19444_low_53 (Length: 236)

Name: NF19444_low_53
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19444_low_53
NF19444_low_53
[»] chr8 (14 HSPs)
chr8 (83-229)||(38613611-38613757)
chr8 (1-86)||(6311097-6311182)
chr8 (1-84)||(7290127-7290211)
chr8 (7-83)||(36979184-36979258)
chr8 (7-83)||(30655448-30655521)
chr8 (6-92)||(10689358-10689442)
chr8 (6-83)||(4760291-4760366)
chr8 (1-62)||(39785024-39785086)
chr8 (6-83)||(18870775-18870849)
chr8 (1-62)||(25328478-25328540)
chr8 (6-83)||(18853384-18853457)
chr8 (7-47)||(33038023-33038063)
chr8 (6-62)||(35745213-35745271)
chr8 (9-85)||(19752609-19752683)
[»] chr5 (19 HSPs)
chr5 (1-84)||(1457362-1457446)
chr5 (1-83)||(27444771-27444854)
chr5 (1-83)||(43598525-43598608)
chr5 (1-83)||(43604017-43604100)
chr5 (1-83)||(43609509-43609592)
chr5 (1-83)||(27449615-27449698)
chr5 (1-83)||(43592080-43592163)
chr5 (1-66)||(30631227-30631292)
chr5 (1-62)||(28807775-28807837)
chr5 (1-62)||(15044512-15044571)
chr5 (18-83)||(31180079-31180142)
chr5 (27-83)||(38191983-38192036)
chr5 (27-83)||(38219208-38219261)
chr5 (5-62)||(37556828-37556887)
chr5 (5-62)||(37561650-37561709)
chr5 (6-62)||(2785197-2785255)
chr5 (6-62)||(31397198-31397256)
chr5 (6-62)||(31402055-31402113)
chr5 (27-83)||(35387474-35387527)
[»] chr4 (11 HSPs)
chr4 (1-84)||(51520257-51520341)
chr4 (1-84)||(56146912-56146996)
chr4 (1-62)||(9224607-9224668)
chr4 (1-62)||(9229394-9229455)
chr4 (1-62)||(45348018-45348079)
chr4 (1-62)||(45357497-45357558)
chr4 (9-83)||(29760449-29760521)
chr4 (5-62)||(3813846-3813904)
chr4 (1-62)||(18855549-18855611)
chr4 (7-83)||(24741748-24741821)
chr4 (1-62)||(5732486-5732546)
[»] chr7 (13 HSPs)
chr7 (1-62)||(24024528-24024589)
chr7 (1-62)||(12396735-12396796)
chr7 (1-62)||(12406155-12406216)
chr7 (1-62)||(4866553-4866614)
chr7 (1-62)||(31109783-31109844)
chr7 (6-85)||(2057763-2057840)
chr7 (6-83)||(20357763-20357837)
chr7 (1-62)||(19992135-19992197)
chr7 (4-83)||(1533654-1533730)
chr7 (5-62)||(21812443-21812501)
chr7 (6-83)||(21645818-21645892)
chr7 (8-83)||(2479148-2479221)
chr7 (8-87)||(47263485-47263562)
[»] chr6 (12 HSPs)
chr6 (1-62)||(22010897-22010958)
chr6 (3-62)||(6438324-6438383)
chr6 (1-62)||(11856795-11856856)
chr6 (1-62)||(14737777-14737838)
chr6 (1-62)||(14742636-14742697)
chr6 (1-62)||(28184325-28184387)
chr6 (5-62)||(28155775-28155832)
chr6 (10-83)||(5674987-5675057)
chr6 (6-83)||(30126010-30126084)
chr6 (6-62)||(6005239-6005297)
chr6 (6-62)||(33336149-33336207)
chr6 (8-83)||(31936398-31936470)
[»] chr2 (10 HSPs)
chr2 (1-62)||(44312824-44312885)
chr2 (7-85)||(11099143-11099219)
chr2 (1-62)||(32246607-32246669)
chr2 (1-62)||(39812188-39812250)
chr2 (8-83)||(14291295-14291367)
chr2 (5-62)||(19344243-19344301)
chr2 (5-62)||(19349101-19349159)
chr2 (6-83)||(9296617-9296691)
chr2 (27-83)||(25403443-25403496)
chr2 (27-83)||(25398305-25398358)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-62)||(35262-35323)
[»] chr3 (14 HSPs)
chr3 (1-62)||(22173395-22173456)
chr3 (6-85)||(7167049-7167126)
chr3 (1-62)||(18656256-18656316)
chr3 (6-83)||(2671802-2671876)
chr3 (8-83)||(40373013-40373085)
chr3 (6-83)||(8739280-8739354)
chr3 (6-83)||(9091518-9091592)
chr3 (10-84)||(8477170-8477242)
chr3 (5-62)||(2673136-2673195)
chr3 (5-62)||(2677292-2677351)
chr3 (5-62)||(8512037-8512096)
chr3 (5-62)||(8516917-8516976)
chr3 (6-62)||(10207755-10207813)
chr3 (4-83)||(28504068-28504145)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-62)||(34149-34211)
[»] chr1 (9 HSPs)
chr1 (1-62)||(41386571-41386633)
chr1 (1-62)||(1055212-1055274)
chr1 (1-62)||(25445290-25445352)
chr1 (1-62)||(39445322-39445384)
chr1 (1-62)||(44024073-44024135)
chr1 (2-62)||(41398060-41398121)
chr1 (27-83)||(19359079-19359132)
chr1 (27-83)||(24203001-24203054)
chr1 (6-47)||(24787583-24787624)
[»] scaffold0355 (2 HSPs)
scaffold0355 (5-62)||(9844-9902)
scaffold0355 (21-62)||(101-143)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-62)||(13171-13233)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-62)||(185-247)
[»] scaffold0978 (1 HSPs)
scaffold0978 (6-84)||(453-528)
[»] scaffold0197 (1 HSPs)
scaffold0197 (6-62)||(19370-19428)
[»] scaffold0188 (1 HSPs)
scaffold0188 (27-83)||(24278-24331)
[»] scaffold0028 (1 HSPs)
scaffold0028 (6-62)||(149161-149219)
[»] scaffold0087 (1 HSPs)
scaffold0087 (8-83)||(44174-44247)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 38613757 - 38613611
Alignment:
Q  83 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 182  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  183 aaaattactcataattttgaaacctgggaccagagatgatgatgatg 229  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 6311182 - 6311097
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaa 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6311182 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggattcacaacagaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7290127 - 7290211
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 84  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||    
T  7290127 ttgttctcattgattaccactatctcttgctccacacatcaatgtttatttcattggtgtgagtttggaaccggattcacaacag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 36979258 - 36979184
Alignment:
Q  7 tcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||    
T  36979258 tcattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 30655521 - 30655448
Alignment:
Q  7 tcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  30655521 tcattgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 10689358 - 10689442
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaagcaaaa 92  Q
    ||||| ||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||| || ||||||| || |||||    
T  10689358 ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccgaaaacacaacacaatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 4760291 - 4760366
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||||||||||||||||| || |||||||||||| |||||  |||||||| ||||||||||||||||| ||||||||    
T  4760291 ctcattgattaccactatctctagctccacacatctttgtt--tttcattgatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39785024 - 39785086
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  39785024 ttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 18870775 - 18870849
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||| |||||||| |||| ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||    
T  18870775 ctcatagattaccattatctcttgctccacacatctttgttt---tcattggtgtgagtttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25328478 - 25328540
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattg-tttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |||||    
T  25328478 ttgttctcattgattatcactatcacttgctccgcacatcattgatttatttcattgttgtga 25328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 18853384 - 18853457
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||| ||||||||||||| |||||||||||||||    ||| |||| ||||||||||||||||||||| ||||||||    
T  18853384 ctcatagattaccactatctcttgctccacacatc----tttgtttcgttggtgtgagtttcaaccggattcacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 33038023 - 33038063
Alignment:
Q  7 tcattgattaccactatcacttgctccacacatcattgttt 47  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  33038023 tcattgattaccactatctcttgctccacacatctttgttt 33038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 35745271 - 35745213
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 62  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  35745271 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 35745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 19752609 - 19752683
Alignment:
Q  9 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 85  Q
    |||||||||||||  |  |||||||||||||| |||||| |||||||||||||| |||  |||||| ||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttt-tttcattggtgtga-tttttaccggattcacaacaga 19752683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 1457362 - 1457446
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 84  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  1457362 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 27444854 - 27444771
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 83  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27444854 ttgtactcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43598608 - 43598525
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 83  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43598608 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43604100 - 43604017
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 83  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43604100 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43609592 - 43609509
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 83  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43609592 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 27449698 - 27449615
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 83  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27449698 ttgtactcattgattaccactatctcttgctccacatatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43592163 - 43592080
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 83  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||  ||||||| ||||||||    
T  43592163 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattgatgtgactttggaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30631292 - 30631227
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt 66  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30631292 ttgttctcatagattaccactatctcttgctccacacatcattgtttatttcatttgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28807775 - 28807837
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28807775 ttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15044571 - 15044512
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||    
T  15044571 ttgttctcattgattaccactatcacttgctctacacgtcattg--tatttcattggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  18 cactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180142 cactatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 38192036 - 38191983
Alignment:
Q  27 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38192036 ttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 38219261 - 38219208
Alignment:
Q  27 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38219261 ttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 37556828 - 37556887
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 62  Q
    |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37556828 tctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 37561650 - 37561709
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 62  Q
    |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37561650 tctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 2785255 - 2785197
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 62  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2785255 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 31397198 - 31397256
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 62  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31397198 ctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31397256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 31402055 - 31402113
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 62  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31402055 ctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31402113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  27 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 51520341 - 51520257
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 84  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  51520341 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 56146912 - 56146996
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 84  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||    
T  56146912 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgaatttggaaccggattcacaacag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9224607 - 9224668
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9224607 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9229394 - 9229455
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9229394 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45348018 - 45348079
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45348018 ttgttctcatagattaccactatcacttgctccacacatcattgtttatttcattggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45357497 - 45357558
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45357497 ttgttctcatagattaccactatcacttgctccacacatcattgtttatttcattggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 29760521 - 29760449
Alignment:
Q  9 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||    
T  29760521 attgattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 3813904 - 3813846
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3813904 tctcattgattaccactatcacttgctccacacatcattggtttatttcattggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18855611 - 18855549
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  18855611 ttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 24741821 - 24741748
Alignment:
Q  7 tcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  24741821 tcattgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5732546 - 5732486
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  5732546 ttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttcattggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24024528 - 24024589
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024528 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12396796 - 12396735
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12396796 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12406216 - 12406155
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12406216 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4866614 - 4866553
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4866614 ttgtcctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31109783 - 31109844
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  31109783 ttgttctcattgattatcactatcacttgctgcacacatcattgtttatttcattggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 2057840 - 2057763
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 85  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  2057840 ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 20357763 - 20357837
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||    
T  20357763 ctcatagattaccactatctcttgctccacacatctttgttt---tcattggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19992197 - 19992135
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||    
T  19992197 ttgttctcattgattatcactatcacctgctccacacatctttggtttatttcattggtgtga 19992135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 1533654 - 1533730
Alignment:
Q  4 ttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||||||||||||||||||   |||||||||||||| ||||   |||||||||||||||||| ||||||| ||||||||    
T  1533654 ttctcattgattaccactatattttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 21812443 - 21812501
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  21812443 tctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 21645892 - 21645818
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||| ||||||||||  |  |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  21645892 ctcatagattaccactcccttttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 2479221 - 2479148
Alignment:
Q  8 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 83  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  2479221 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 47263562 - 47263485
Alignment:
Q  8 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaacagaag 87  Q
    |||||||||||||| ||  ||||||||| |||| ||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  47263562 cattgattaccact-tcctttgctccacgcatctttgttt--ttcattggtgtgattatcaaccggaactcacaacagaag 47263485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22010897 - 22010958
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010897 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 6438383 - 6438324
Alignment:
Q  3 gttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438383 gttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11856856 - 11856795
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11856856 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14737777 - 14737838
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14737777 ttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14742636 - 14742697
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14742636 ttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28184387 - 28184325
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28184387 ttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 28155775 - 28155832
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28155775 tctcattgattatcactatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 5674987 - 5675057
Alignment:
Q  10 ttgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||||  |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  5674987 ttgattaccactatcttttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 30126010 - 30126084
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||| ||||| ||||| | ||||||||||||||| ||||||   |||||||||||| ||||||||||| ||||||||    
T  30126010 ctcatagattatcactacctcttgctccacacatctttgttt---tcattggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 6005297 - 6005239
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 62  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6005297 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 6005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 33336149 - 33336207
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 62  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  33336149 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 33336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 31936470 - 31936398
Alignment:
Q  8 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||||||||||||  |  |||||||||||||| |||||  |||||||||||||| ||| ||||||| ||||||||    
T  31936470 cattgattaccacttccttttgctccacacatctttgtt--tttcattggtgtga-ttttaaccggattcacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44312824 - 44312885
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312824 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 11099143 - 11099219
Alignment:
Q  7 tcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 85  Q
    |||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||||    
T  11099143 tcattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaacaga 11099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32246669 - 32246607
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32246669 ttgttctcatagattaccactatcacttgctccacacatcattggtttatttcattggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39812188 - 39812250
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  39812188 ttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 14291367 - 14291295
Alignment:
Q  8 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||||||    
T  14291367 cattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 19344301 - 19344243
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19344301 tctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 19349159 - 19349101
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19349159 tctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 9296617 - 9296691
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||| ||||||||||| |  |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  9296617 ctcatagattaccactaccttttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 25403496 - 25403443
Alignment:
Q  27 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  25403496 ttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 25398358 - 25398305
Alignment:
Q  27 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||| |||||||   |||||||||||||||||||| || ||||||||    
T  25398358 ttgctccacacatctttgttta---cattggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35262 - 35323
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35262 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22173395 - 22173456
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22173395 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 7167126 - 7167049
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 85  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  7167126 ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 7167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18656316 - 18656256
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 62  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  18656316 ttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttcattggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 2671802 - 2671876
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||| ||||||| ||||||||    
T  2671802 ctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 40373013 - 40373085
Alignment:
Q  8 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||||||    
T  40373013 cattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcacaaca 40373085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 8739280 - 8739354
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | ||||||||    
T  8739280 ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattcacaaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 9091518 - 9091592
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | ||||||||    
T  9091518 ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattcacaaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 8477242 - 8477170
Alignment:
Q  10 ttgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttca-accggaatcacaacag 84  Q
    |||||||||||||||  |||||||||||||| ||||   |||||||||||||||||| | |||||| |||||||||    
T  8477242 ttgattaccactatcttttgctccacacatctttgt---tttcattggtgtgagttttataccggattcacaacag 8477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 2673136 - 2673195
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 62  Q
    |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2673136 tctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 2677292 - 2677351
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 62  Q
    |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2677292 tctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2677351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 8512096 - 8512037
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 62  Q
    |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8512096 tctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8512037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 8516976 - 8516917
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 62  Q
    |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8516976 tctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 10207813 - 10207755
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 62  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  10207813 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 10207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 28504068 - 28504145
Alignment:
Q  4 ttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    ||||||| ||||| ||||| |  ||||||||||||||||||||   ||||||||||||||||   |||||| ||||||||    
T  28504068 ttctcatagattatcactaccttttgctccacacatcattgtt--attcattggtgtgagttaagaccggattcacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34149 - 34211
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34149 ttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41386633 - 41386571
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41386633 ttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1055212 - 1055274
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  1055212 ttgttcacattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25445290 - 25445352
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  25445290 ttgttctcattgattatcactatcgcttgctccacacatcattggtttatttcattggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39445384 - 39445322
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  39445384 ttgttcacattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44024073 - 44024135
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  44024073 ttgttctcattgattatcactatcagttgctccacacatcattggtttatttcattggtgtga 44024135  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 41398121 - 41398060
Alignment:
Q  2 tgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  41398121 tgttctcattgattatcactatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  27 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 24203001 - 24203054
Alignment:
Q  27 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  24203001 ttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 24203054  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 24787583 - 24787624
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgttt 47  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  24787583 ctcatttattaccactatctcttgctccacacatctttgttt 24787624  T

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Target: scaffold0355 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 9844 - 9902
Alignment:
Q  5 tctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9844 tctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

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Target: scaffold0355; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 101 - 143
Alignment:
Q  21 tatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  101 tatcacttgctccacacatcattggtttatttaattggtgtga 143  T

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Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13233 - 13171
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtga 13171  T

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Target: scaffold0464 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 247 - 185
Alignment:
Q  1 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 62  Q
    |||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||    
T  247 ttgttctcattgattatcaccatcacttgctccacacatctttggtttatttcattggtgtga 185  T

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Target: scaffold0978 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 453 - 528
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacag 84  Q
    ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||| ||  ||| |||||||||    
T  453 ctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagttttaaatggattcacaacag 528  T

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Target: scaffold0197 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 19370 - 19428
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 62  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  19370 ctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 19428  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 24278 - 24331
Alignment:
Q  27 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 83  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  24278 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 24331  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 149161 - 149219
Alignment:
Q  6 ctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 62  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  149161 ctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 149219  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 44174 - 44247
Alignment:
Q  8 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 83  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  44174 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 44247  T

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