View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19444_low_54 (Length: 227)

Name: NF19444_low_54
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19444_low_54
NF19444_low_54
[»] chr3 (3 HSPs)
chr3 (14-211)||(14206423-14206621)
chr3 (14-211)||(14214171-14214369)
chr3 (162-210)||(36627190-36627238)
[»] chr1 (1 HSPs)
chr1 (14-211)||(52438920-52439123)
[»] scaffold0065 (1 HSPs)
scaffold0065 (143-195)||(35647-35699)
[»] chr7 (2 HSPs)
chr7 (162-210)||(7147669-7147717)
chr7 (162-211)||(22794129-22794178)
[»] scaffold0041 (1 HSPs)
scaffold0041 (162-210)||(914-962)
[»] chr2 (2 HSPs)
chr2 (78-133)||(3606751-3606806)
chr2 (99-131)||(8802120-8802152)
[»] chr8 (3 HSPs)
chr8 (162-211)||(11080820-11080869)
chr8 (100-133)||(31262709-31262742)
chr8 (162-211)||(42307754-42307803)
[»] chr6 (1 HSPs)
chr6 (162-211)||(682534-682583)
[»] chr5 (3 HSPs)
chr5 (162-211)||(30915756-30915805)
chr5 (162-211)||(33362374-33362423)
chr5 (99-131)||(16308876-16308908)
[»] chr4 (2 HSPs)
chr4 (162-211)||(37642327-37642376)
chr4 (162-211)||(54373797-54373846)
[»] scaffold0171 (1 HSPs)
scaffold0171 (162-210)||(29042-29090)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 14206423 - 14206621
Alignment:
Q  14 ggtgactgagaagtataaggttatgtgatggatttagatttcaannnnnnnnnnnnngaaattttgggtttagattataagggtgtgatgaagaagaaaa 113  Q
    |||||| ||||||  ||||||||| |||||||||||||||||||             ||| ||||||||||||||||| |||||||||||||||||||||    
T  14206423 ggtgacagagaagggtaaggttatctgatggatttagatttcaatttttttatttttgaatttttgggtttagattatgagggtgtgatgaagaagaaaa 14206522  T
Q  114 aggaagaagatgaagaaatgnnnnnnnnn-ttacttgttgatggttcacttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    ||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14206523 aggaagaagatgaagaaatgaaaaaaaaaattacttgttgatggttcacttgattatgtgatttttattgaagttgaaatgataaattttttaaagaac 14206621  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 14214171 - 14214369
Alignment:
Q  14 ggtgactgagaagtataaggttatgtgatggatttagatttcaannnnnnnnnnnnngaaattttgggtttagattataagggtgtgatgaagaagaaaa 113  Q
    |||||| ||||||  ||||||||| |||||||||||||||||||             ||| ||||||||||||||||| |||||||||||||||||||||    
T  14214171 ggtgacagagaagggtaaggttatctgatggatttagatttcaatttttttatttttgaatttttgggtttagattatgagggtgtgatgaagaagaaaa 14214270  T
Q  114 aggaagaagatgaagaaatgnnnnnnnnn-ttacttgttgatggttcacttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    ||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14214271 aggaagaagatgaagaaatgaaaaaaaaaattacttgttgatggttcacttgattatgtgatttttattgaagttgaaatgataaattttttaaagaac 14214369  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 36627238 - 36627190
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaa 210  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  36627238 ttgattatgtgatttttgttgaagttgaaatgataaatttttgaaagaa 36627190  T

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Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 52438920 - 52439123
Alignment:
Q  14 ggtgactgagaagtataaggttatgtgatggatttagatttcaannnnnnnnnnnnngaaattttgggtttagattataagggtgtgatgaagaagaaaa 113  Q
    |||||| |||||| ||||||||||||||||||||||||||||||             ||||||||||||||||||||| |||||||||| ||||||||||    
T  52438920 ggtgacagagaaggataaggttatgtgatggatttagatttcaatttttttatttttgaaattttgggtttagattatgagggtgtgataaagaagaaaa 52439019  T
Q  114 aggaagaagatgaagaaatgnnnnnnnnn------ttacttgttgatggttcacttgattatgtgatttttattgaaattgaaatgataaattttttaaa 207  Q
    ||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52439020 aggaagaagatgaagaaatgaaaagaaaaaaaaaattacttgttgatggttcacttgattatgtgatttttattgaagttgaaatgataaattttttaaa 52439119  T
Q  208 gaac 211  Q
    ||||    
T  52439120 gaac 52439123  T

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Target: scaffold0065 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 35699 - 35647
Alignment:
Q  143 ttacttgttgatggttcacttgattatgtgatttttattgaaattgaaatgat 195  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  35699 ttacttgttgatggttcacttgattatgtgatttttgttgaagttgaaatgat 35647  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 7147669 - 7147717
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaa 210  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7147669 ttgattatgtgatttttgttgaaattgaaatgataaattttttaaagaa 7147717  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 22794129 - 22794178
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||| |||||||    
T  22794129 ttgattatgtggtttttgttgaagttgaaatgatgaatttttaaaagaac 22794178  T

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Target: scaffold0041 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 914 - 962
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaa 210  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  914 ttgattatgtgatttttgttgaagttgaaatgattaattttttaaagaa 962  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 3606751 - 3606806
Alignment:
Q  78 tgggtttagattataagggtgtgatgaagaagaaaaaggaagaagatgaagaaatg 133  Q
    ||||||||| | || | ||||||||||||| || ||||||||||||||||||||||    
T  3606751 tgggtttaggtgatgaaggtgtgatgaagatgagaaaggaagaagatgaagaaatg 3606806  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 8802152 - 8802120
Alignment:
Q  99 tgatgaagaagaaaaaggaagaagatgaagaaa 131  Q
    ||||||||||||| |||||||||||||||||||    
T  8802152 tgatgaagaagaagaaggaagaagatgaagaaa 8802120  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 11080820 - 11080869
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||| |||||||    
T  11080820 ttgattatgtggtttttgttgaagttgaaatgatgaatttttgaaagaac 11080869  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 31262709 - 31262742
Alignment:
Q  100 gatgaagaagaaaaaggaagaagatgaagaaatg 133  Q
    |||||||||||| |||||||||||||||||||||    
T  31262709 gatgaagaagaagaaggaagaagatgaagaaatg 31262742  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 42307803 - 42307754
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||| |||||||    
T  42307803 ttgattatgtggtttttgttgaagttgaaatgatgaatttttaaaagaac 42307754  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 682583 - 682534
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||| |||||||    
T  682583 ttgattatgtggtttttgttgaagttgaaatgatgaatttttaaaagaac 682534  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 30915805 - 30915756
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||| |||||||    
T  30915805 ttgattatgtggtttttgttgaagttgaaatgatgaatttttgaaagaac 30915756  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 33362374 - 33362423
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||| |||||||    
T  33362374 ttgattatgtggtttttgttgaagttgaaatgatgaatttttgaaagaac 33362423  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 16308908 - 16308876
Alignment:
Q  99 tgatgaagaagaaaaaggaagaagatgaagaaa 131  Q
    |||||||||||| ||||||||||||||||||||    
T  16308908 tgatgaagaagagaaaggaagaagatgaagaaa 16308876  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 37642327 - 37642376
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||| |||||||    
T  37642327 ttgattatgtggtttttgttgaagttgaaatgatgaatttttgaaagaac 37642376  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 54373797 - 54373846
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaac 211  Q
    |||||| |||| ||||| ||||| |||||||||| |||||||||||||||    
T  54373797 ttgattttgtggtttttgttgaagttgaaatgatgaattttttaaagaac 54373846  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 29042 - 29090
Alignment:
Q  162 ttgattatgtgatttttattgaaattgaaatgataaattttttaaagaa 210  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||| ||||||    
T  29042 ttgattatgtggtttttgttgaagttgaaatgatgaatttttgaaagaa 29090  T

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