View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19444_low_6 (Length: 612)

Name: NF19444_low_6
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19444_low_6
NF19444_low_6
[»] chr4 (5 HSPs)
chr4 (1-597)||(2884184-2884780)
chr4 (1-315)||(2900466-2900780)
chr4 (381-597)||(2899780-2899996)
chr4 (25-304)||(2874214-2874493)
chr4 (400-597)||(2874715-2874912)
[»] chr2 (7 HSPs)
chr2 (1-298)||(44213180-44213477)
chr2 (1-298)||(44225341-44225638)
chr2 (1-298)||(44236155-44236451)
chr2 (403-516)||(44225231-44225344)
chr2 (403-516)||(44236045-44236158)
chr2 (415-509)||(44213077-44213171)
chr2 (20-65)||(43460411-43460456)
[»] chr7 (9 HSPs)
chr7 (25-272)||(39550630-39550877)
chr7 (25-260)||(39360745-39360980)
chr7 (25-272)||(39567423-39567670)
chr7 (25-260)||(39334936-39335171)
chr7 (25-260)||(39346194-39346429)
chr7 (25-272)||(39541372-39541619)
chr7 (25-263)||(39577239-39577477)
chr7 (25-83)||(39591896-39591954)
chr7 (136-219)||(42135603-42135686)
[»] chr8 (2 HSPs)
chr8 (136-242)||(4498043-4498149)
chr8 (7-77)||(43526723-43526793)
[»] chr1 (3 HSPs)
chr1 (21-74)||(2163906-2163959)
chr1 (22-212)||(2151494-2151684)
chr1 (7-77)||(19539247-19539317)
[»] chr6 (1 HSPs)
chr6 (25-74)||(3828397-3828446)
[»] chr3 (2 HSPs)
chr3 (25-74)||(49770236-49770285)
chr3 (22-58)||(8537388-8537424)


Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 2884184 - 2884780
Alignment:
Q  1 ttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttc 100  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884184 ttggtcgggccagcaaatgcattattcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttc 2884283  T
Q  101 acattcttaatggaaccacagttatctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884284 acattcttaatggaaccacagttatctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgt 2884383  T
Q  201 ctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2884384 ctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagcggactttcttcaagaagtaagt 2884483  T
Q  301 caaagtttatatcttgagtccattctttcaagtttttggtgaacactatatgaagatatataagtttatcgaaacatgaccttaatctattttttctttc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2884484 caaagtttatatcttgagtccattctttcaagtttttggtgaacactatatgaagatatataagtttatcgaaacatgaccttaatctatttcttctttc 2884583  T
Q  401 aggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcata 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884584 aggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcata 2884683  T
Q  501 ccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaagaatcatccagcagcattaacaactaaaaagtatggtgttaac 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2884684 ccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaac 2884780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 2900780 - 2900466
Alignment:
Q  1 ttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttc 100  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  |||||||||||    
T  2900780 ttggttggaccagcaaatgctttattcatggatgaaatatctactggcttggacagttccacaactttccaaattgtgaaatctcttaggcaatatgttc 2900681  T
Q  101 acattcttaatggaaccacagttatctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgt 200  Q
    | ||||||||||||||  ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2900680 atattcttaatggaactgcagttatctctttgcttcaaccagcaccagagacttatgaactttttgatgacattattcttatatccgatggtcaaattgt 2900581  T
Q  201 ctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaagt 300  Q
    ||| |||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  2900580 ctatcaaggaccgcgtgaacatgttcttgacttttttgaatcagttggtttcaaatgtcctgagaggaaaggggtagctgactttcttcaagaagtaagt 2900481  T
Q  301 caaagtttatatctt 315  Q
    |||||||||||||||    
T  2900480 caaagtttatatctt 2900466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 381 - 597
Target Start/End: Complemental strand, 2899996 - 2899780
Alignment:
Q  381 cttaatctattttttctttcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaattt 480  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2899996 cttaatctatttctccttgcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttttaactgttactcaattt 2899897  T
Q  481 gctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaagaatcatccagcagcattaacaacta 580  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2899896 gctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaagtctaagaatcatccagcagcattaacaacta 2899797  T
Q  581 aaaagtatggtgttaac 597  Q
    ||||||| |||||||||    
T  2899796 aaaagtacggtgttaac 2899780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 2874214 - 2874493
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacagtta 124  Q
    ||||||||||||||||| ||||| || || ||||||||| |||| |||||||||| |||||||  |||||||||| | |||||| |||||||  || |||    
T  2874214 ttcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatctcttaggcaatatgtttatattcttcatggaactgcactta 2874313  T
Q  125 tctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatat 224  Q
    |||| || || || |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||| || |    
T  2874314 tctcattgcttcagccagcaccagagacttatgaactttttgatgacattattcttttatctgatggtgaaattgtttaccaaggacctcgtgaaaatgt 2874413  T
Q  225 tcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaagtcaaa 304  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| |  ||||| || |||||||||||||||||||    
T  2874414 tcttgaattttttgaatctattggtttcaaatgtcctgagaggaaaggcgttgctgatttccttcaagaagtaagtcaaa 2874493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 400 - 597
Target Start/End: Original strand, 2874715 - 2874912
Alignment:
Q  400 caggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcat 499  Q
    |||||||||||||  |||||||||||||| |||||| |  |||||||  ||||||| ||||||||||| |||||||||||||| ||||||||  | || |    
T  2874715 caggtaacttcaagaaaggatcaagagcaatattggatgcacagagatgaaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgt 2874814  T
Q  500 accatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaagaatcatccagcagcattaacaactaaaaagtatggtgttaac 597  Q
     ||||||||| | ||  |    ||| ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  2874815 tccatgttgggaagacgatcaaagaagagcttgaaattccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaac 2874912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 44213477 - 44213180
Alignment:
Q  1 ttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttc 100  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||||||||| ||||||||||| |||||   |||||||||||    
T  44213477 ttggttggaccagccaatgcattgttcatggatgaaatttctactggactggacagttccacaacttttcaaattgtgagctctctgaggcaatatgttc 44213378  T
Q  101 acattcttaatggaaccacagttatctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgt 200  Q
    ||||| | ||||| ||  ||||||| ||  | ||||| |||||||||||||||||||| |||||||||||||||||  | ||||||||||| ||| ||||    
T  44213377 acattatgaatggcactgcagttatatcactgctccagccagcacctgagacttatgatctttttgatgacattatcttaatatctgatggccaagttgt 44213278  T
Q  201 ctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaa 298  Q
     ||||| || || |||||| || ||||||| ||||| |||||  | ||||||||||||||||| ||||||||||  ||||| ||||||||||||||||    
T  44213277 ataccatggcccccgcgaatatgttcttgactttttcgaatctatgggtttcaaatgtcctgaaaggaaaggtgttgctgattttcttcaagaagtaa 44213180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 44225638 - 44225341
Alignment:
Q  1 ttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttc 100  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||| ||||| || |||||||| |||||    ||||||||||    
T  44225638 ttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctgagacaatatgttc 44225539  T
Q  101 acattcttaatggaaccacagttatctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgt 200  Q
    ||||| | ||||| ||  ||||||| ||  | |||||||||||||||||||||||||| |||||||||||||||||  | || |||||||| ||| ||||    
T  44225538 acattatgaatggcactgcagttatatcactgctccaaccagcacctgagacttatgatctttttgatgacattatcttaatttctgatggccaagttgt 44225439  T
Q  201 ctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaa 298  Q
     ||||| || || |||||| || ||||||| ||||||||| || | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  44225438 ataccatggcccccgcgaatatgttcttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgctgctgactttcttcaagaagtaa 44225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 44236451 - 44236155
Alignment:
Q  1 ttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttc 100  Q
    ||||| |||||||| ||||||||||||||||||||| | ||||||||  ||||||||||||||||||| || |||||||| |||||    ||||||||||    
T  44236451 ttggttggaccagccaatgcattgttcatggatgaatt-tctactgggctggacagttccacaacttttcagattgtgagctctctgagacaatatgttc 44236353  T
Q  101 acattcttaatggaaccacagttatctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgt 200  Q
    ||||| | ||||| ||  ||||||| ||  | |||||||||||||||||||||||||| |||||||||||||||||  | || |||||||| ||| ||||    
T  44236352 acattatgaatggcactgcagttatatcactgctccaaccagcacctgagacttatgatctttttgatgacattatcttaatctctgatggccaagttgt 44236253  T
Q  201 ctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaa 298  Q
     ||||| || || |||||| || ||||||| ||||||||| || | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  44236252 ataccatggcccccgcgaatatgttcttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgactttcttcaagaagtaa 44236155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 516
Target Start/End: Complemental strand, 44225344 - 44225231
Alignment:
Q  403 gtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcatacc 502  Q
    |||||||| || ||||||||||  ||||| |||||   ||||||  |||||||||| |||||||||||||||||||| |||||||| |||||||| | ||    
T  44225344 gtaacttccaaaaaggatcaagcacagtactgggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttcc 44225245  T
Q  503 atgttggaaggaaa 516  Q
    || |||| ||||||    
T  44225244 atattggtaggaaa 44225231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 516
Target Start/End: Complemental strand, 44236158 - 44236045
Alignment:
Q  403 gtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcatacc 502  Q
    |||||||| || ||||||||||  ||||| |||||   ||||||  |||||||||| |||||||||||||||||||| |||||||| |||||||| | ||    
T  44236158 gtaacttccaaaaaggatcaagcacagtactgggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttcc 44236059  T
Q  503 atgttggaaggaaa 516  Q
    || |||| ||||||    
T  44236058 atattggtaggaaa 44236045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 415 - 509
Target Start/End: Complemental strand, 44213171 - 44213077
Alignment:
Q  415 aaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttgg 509  Q
    ||||||||||  ||||| |||||   ||||||  |||||||| | | ||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  44213171 aaggatcaagcacagtactgggtgcgcagagatcaaccataccgatatgtaactgttactcaatttgccgaggcatttcaatcattccatattgg 44213077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 43460456 - 43460411
Alignment:
Q  20 cattgttcatggatgaaatatctactggtttggacagttccacaac 65  Q
    |||||||||||||||||||||| |||||| | || |||||||||||    
T  43460456 cattgttcatggatgaaatatcaactggtcttgatagttccacaac 43460411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 39550877 - 39550630
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacagtta 124  Q
    ||||||||||||||||||||||||||||| || || |||||||| || |||||||  ||  |  |||||| ||| |||||||| || |||||  | || |    
T  39550877 ttcatggatgaaatatctactggtttggatagctcgacaacttttcagattgtgaattcaatgaagcaatttgtccacattctcaaaggaactgcggtca 39550778  T
Q  125 tctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatat 224  Q
    ||||  | || || ||| |||| ||||||||  | |||||||| |||||||||||  | |||||| |||| ||| | |||||||| || || || ||  |    
T  39550777 tctcgctccttcagccaccaccagagacttacaatctttttgacgacattattctactctctgatagtcacattatataccaaggtccccgtgagcacgt 39550678  T
Q  225 tcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaagg 272  Q
     ||||||||||| |||||| ||||||| ||||||||||| ||||||||    
T  39550677 gcttgaatttttcgaatcaattggttttaaatgtcctgataggaaagg 39550630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 39360745 - 39360980
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacagtta 124  Q
    ||||||||||||||||||||||||||||| || || |||||||| ||||||||||  ||  |   |||||||||||||||||| || ||||||   || |    
T  39360745 ttcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaatatgttcacattctcaaaggaaccgtggtga 39360844  T
Q  125 tctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatat 224  Q
    ||||  | || || ||  |||| ||||||||  | |||||||| |||||||| ||  | |||||| |||| ||| | |||||||| || || |||||  |    
T  39360845 tctcactcctgcagcctccaccagagacttacaatctttttgacgacattatactactctctgatagtcacattatttaccaaggtccccgggaacacgt 39360944  T
Q  225 tcttgaattttttgaatcagttggtttcaaatgtcc 260  Q
     ||||||||||| |||||| ||||||| ||||||||    
T  39360945 gcttgaatttttcgaatcaattggttttaaatgtcc 39360980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 39567670 - 39567423
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacagtta 124  Q
    |||||||| |||||||||||||||||||| || || |||||||| ||||||||||  ||  |   |||| |||| |||||||| ||||||||| |  |||    
T  39567670 ttcatggacgaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccatta 39567571  T
Q  125 tctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatat 224  Q
    ||||  | || || ||| |||| ||||||||  | |||||||| ||| |||||||  | |||||| |||  ||| | |||||||| || || |||||  |    
T  39567570 tctcactcctgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgt 39567471  T
Q  225 tcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaagg 272  Q
     |||||||||||||||||| | ||||| |||||||| || ||||||||    
T  39567470 acttgaattttttgaatcaatcggttttaaatgtccagataggaaagg 39567423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 39334936 - 39335171
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacagtta 124  Q
    ||||||||||||||||||||||||||||| || || |||||||| ||||||||||  ||  |  |||||||||| |||||||| || |||||| | || |    
T  39334936 ttcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaagcaatatgtccacattctcaaaggaaccgcggtga 39335035  T
Q  125 tctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatat 224  Q
    ||||  | || || ||  |||| || |||||  | || |||||   |||||||||  | |||||| |||| ||| | |||||||| ||||| |||||  |    
T  39335036 tctcactcctgcagccgccaccagaaacttacaatctatttgacagcattattctactctctgatagtcatattatataccaaggtcctcgggaacacgt 39335135  T
Q  225 tcttgaattttttgaatcagttggtttcaaatgtcc 260  Q
     ||||||||||| |||||| ||||||| ||||||||    
T  39335136 gcttgaatttttcgaatcaattggttttaaatgtcc 39335171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 39346194 - 39346429
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacagtta 124  Q
    ||||||||||||||||||||||||||||| || || |||||||| ||||||||||  ||  |  |||||||||| |||||||| || |||||| | || |    
T  39346194 ttcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaagcaatatgtccacattctcaaaggaaccgcggtga 39346293  T
Q  125 tctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatat 224  Q
    ||||  | || || ||  |||| || |||||  | || || || |||||||||||  | |||||| |||| ||| | |||||||| ||||| |||||  |    
T  39346294 tctcactcctgcagccgccaccagaaacttacaatctattcgacgacattattctactctctgatagtcacattatataccaaggtcctcgggaacacgt 39346393  T
Q  225 tcttgaattttttgaatcagttggtttcaaatgtcc 260  Q
     |||||||||||  ||||| ||||||| ||||||||    
T  39346394 gcttgaatttttcaaatcaattggttttaaatgtcc 39346429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 39541619 - 39541372
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacagtta 124  Q
    ||||||||||||||||||||||||||||| || || |||||||| ||||||||||  ||  |  |||| ||||| |||||||| || |||||  | || |    
T  39541619 ttcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaataaagcagtatgtacacattctcaaaggaacggctgtca 39541520  T
Q  125 tctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatat 224  Q
    ||||  | || || ||| |||| ||||| |   | ||||||||||| ||||||||  | |||||| |||| ||| | |||||||| || || || ||  |    
T  39541519 tctcactccttcagccaccaccagagacattcaatctttttgatgaaattattctactctctgatagtcacattatataccaaggtccccgtgagcacgt 39541420  T
Q  225 tcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaagg 272  Q
     ||||||||||| |||||| | ||||| ||||||||||| ||||||||    
T  39541419 gcttgaatttttcgaatcaatcggttttaaatgtcctgataggaaagg 39541372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 39577477 - 39577239
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacagtta 124  Q
    ||||||||||||||||||||||||||||| || || |||||||| ||| |||||| |||  |  |||| ||||| ||| | || ||||||||  | || |    
T  39577477 ttcatggatgaaatatctactggtttggatagctcaacaacttttcaagttgtgaaatcaatgaagcagtatgtccacctgctcaatggaactgctgtga 39577378  T
Q  125 tctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatat 224  Q
    ||||  |  | || ||| |||| ||||||||||| |||||||| |||||||||||  | ||||| || || ||||| ||||| || ||| | |||||  |    
T  39577377 tctcactcttgcagccaccaccagagacttatgatctttttgacgacattattctactctctgaggggcacattgtgtaccagggtccttgtgaacacgt 39577278  T
Q  225 tcttgaattttttgaatcagttggtttcaaatgtcctga 263  Q
     |||||||||||||  ||| | |||||||| ||||||||    
T  39577277 gcttgaattttttgcttcattaggtttcaagtgtcctga 39577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 39591954 - 39591896
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatc 83  Q
    ||||||||||||||||||||||||||||| || || |||||||| ||| ||||||||||    
T  39591954 ttcatggatgaaatatctactggtttggatagctcgacaacttttcaagttgtgagatc 39591896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 42135686 - 42135603
Alignment:
Q  136 caaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaa 219  Q
    ||||||||||| ||||| | |||||| |||||||||||||| ||  | || || ||||||||||| ||||||||||| ||||||    
T  42135686 caaccagcaccagagacatttgaactctttgatgacattatcctactttcagaaggtcaaattgtataccaaggaccacgcgaa 42135603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 4498043 - 4498149
Alignment:
Q  136 caaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaatttt 235  Q
    |||||||| |||||||| |  || ||||||||||||||||||||||||||||| |||||| |||| |||||||| || || ||||| ||| ||||||| |    
T  4498043 caaccagctcctgagacattcgatctttttgatgacattattcttatatctgagggtcaagttgtgtaccaaggtccacgtgaacacattgttgaattct 4498142  T
Q  236 ttgaatc 242  Q
    |||||||    
T  4498143 ttgaatc 4498149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 43526723 - 43526793
Alignment:
Q  7 ggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccacaactttccaaattgt 77  Q
    ||||| ||||| ||| | || ||||||| ||| || ||||||||||| ||||||||||| |||||||||||    
T  43526723 ggacctgcaaaagcactctttatggatggaatttcaactggtttggatagttccacaaccttccaaattgt 43526793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 2163959 - 2163906
Alignment:
Q  21 attgttcatggatgaaatatctactggtttggacagttccacaactttccaaat 74  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||| |||||    
T  2163959 attgttcatggacgaaatatcaactggtttggacagttcaacaacttttcaaat 2163906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 2151684 - 2151494
Alignment:
Q  22 ttgttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacag 121  Q
    |||||||||||||| ||||| | ||||||||||||||| |||||||| || ||  | |  ||  |  |||||| | |||| ||||| ||||||||  ||     
T  2151684 ttgttcatggatgagatatcaaatggtttggacagttcaacaacttttcagataatcaactcaatcaagcaatctattcatattctaaatggaactgcac 2151585  T
Q  122 ttatctctttactccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacc 212  Q
    || | ||| | || ||||||||||| || ||||||||||| |||||||| || || ||| |  ||||||| |||||||| || ||||||||    
T  2151584 ttgtttctcttctacaaccagcaccagaaacttatgaactatttgatgatataatacttctcactgatggacaaattgtgtatcaaggacc 2151494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 19539247 - 19539317
Alignment:
Q  7 ggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccacaactttccaaattgt 77  Q
    ||||| ||||| ||| | || ||||||| ||| || ||||||||||| ||||||||||| |||||||||||    
T  19539247 ggacctgcaaaagcactctttatggatggaatttcaactggtttggatagttccacaaccttccaaattgt 19539317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 3828446 - 3828397
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaat 74  Q
    ||||||||||||||||| ||||||||||||||||| || || ||||||||    
T  3828446 ttcatggatgaaatatcgactggtttggacagttcaaccacattccaaat 3828397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 49770236 - 49770285
Alignment:
Q  25 ttcatggatgaaatatctactggtttggacagttccacaactttccaaat 74  Q
    |||||||| |||||||| ||||||||||||||||| ||||| || |||||    
T  49770236 ttcatggacgaaatatcgactggtttggacagttcaacaacatttcaaat 49770285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 8537424 - 8537388
Alignment:
Q  22 ttgttcatggatgaaatatctactggtttggacagtt 58  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  8537424 ttgttcatggatgaaatatcaactggcttggacagtt 8537388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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