View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_60 (Length: 217)
Name: NF19444_low_60
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 42309543 - 42309350
Alignment:
| Q |
11 |
tagataattctaaaggttggacagaggaagagattgacaaaacagccgaggcaattggatacggggctgttaagtaagttctttatctcaataatgtttt |
110 |
Q |
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| T |
42309543 |
tagataatgctaaaggttggacagaggaagagattgacaaaacagccgaggcaattggatatggggctgttaagtaagttctttatctcaataatgtttt |
42309444 |
T |
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| Q |
111 |
cccatattcagagtataatagccaacatgctttccagtttccagtactaacatgtagttaacttacttgtagacatactttattgagttaaatt |
204 |
Q |
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| T |
42309443 |
cccatattcaaagtataatagccaacatgctttccagtttccagtactaacatgtagttaacttacttgtagacatactttattgagttaaatt |
42309350 |
T |
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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 47973682 - 47973578
Alignment:
| Q |
11 |
tagataattctaaaggttggacagaggaagagattgacaaaacagccgaggcaattggatacggggctgttaagtaagttctttatctcaataatgtttt |
110 |
Q |
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|||||||| |||||| |||||| |||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |
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| T |
47973682 |
tagataatgctaaagattggacggaggaagagattgagaaaacatccgaggcaattggatatggggctgtgaagtaagttctgtatctcaataacgtttt |
47973583 |
T |
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| Q |
111 |
cccat |
115 |
Q |
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||||| |
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| T |
47973582 |
cccat |
47973578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 51569240 - 51569345
Alignment:
| Q |
11 |
tagataattctaaaggttggacagaggaagagattgacaaaacagccgaggcaattggatacggggctgttaagtaagttctttatctcaataatgtttt |
110 |
Q |
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|||||||| |||||| |||||| |||||||||||||| ||||| | |||||||||||||| || ||||||||||||||||||||||||||||||| ||| |
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| T |
51569240 |
tagataatgctaaagattggacggaggaagagattgaaaaaacttcagaggcaattggatatggagctgttaagtaagttctttatctcaataatgcttt |
51569339 |
T |
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| Q |
111 |
cccata |
116 |
Q |
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|||||| |
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| T |
51569340 |
cccata |
51569345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 19749246 - 19749192
Alignment:
| Q |
34 |
gaggaagagattgacaaaacagccgaggcaattggatacggggctgttaagtaag |
88 |
Q |
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||||| |||||||| |||||| | ||||||||||| ||||||||||||||||||| |
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| T |
19749246 |
gaggaggagattgagaaaacatcagaggcaattggttacggggctgttaagtaag |
19749192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 34032159 - 34032213
Alignment:
| Q |
34 |
gaggaagagattgacaaaacagccgaggcaattggatacggggctgttaagtaag |
88 |
Q |
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||||| |||||||| | |||| | ||||||||||| ||||||||||||||||||| |
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| T |
34032159 |
gaggaggagattgagagaacatcagaggcaattggttacggggctgttaagtaag |
34032213 |
T |
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